Steven J M Jones (Steven J Jones, S J M Jones, Steven Jones, Martin R Jones)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 79

Top Venues

Nature communications

Clinical cancer research : an official journal of the American Association for Cancer Research

Genes

NPJ precision oncology

BC Cancer

Wellcome Trust Sanger Institute (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

BC Cancer Jan 04 2019

Canada

Co-Director and Head, Bioinformatics :: Genome Sciences Centre

Education History

Wellcome Trust Sanger Institute

United Kingdom

PHD :: Bioinformatics

Publications

Rebecca J Deyell, Yaoqing Shen, Emma Titmuss, Katherine Dixon, Laura M Williamson, Erin D Pleasance, Jessica M T Nelson, Sanna Abbasi, Martin Krzywinski, Linlea Armstrong, Melika Bonakdar, Carolyn Ch'ng, Eric Chuah, Chris Dunham, Alexandra Fok, Martin R Jones, Anna F Lee, Yussanne Ma, Richard A Moore, Andrew J Mungall, Karen L Mungall, Paul C Rogers, Kasmintan A Schrader, Alice Virani, Kathleen Wee, Sean S Young, Yongjun Zhao, Steven J M Jones, Janessa Laskin, Marco A Marra, Shahrad Rod Rassekh
Whole genome and transcriptome integrated analyses guide clinical care of pediatric poor prognosis cancers. Nature communications 15 (1) (2024)
Elika Garg, Paola Arguello-Pascualli, Olga Vishnyakova, Anat R Halevy, Samantha Yoo, Jennifer D Brooks, Shelley B Bull, France Gagnon, Celia M T Greenwood, Rayjean J Hung, Jerald F Lawless, Jordan Lerner- Ellis, Jessica K Dennis, Rohan J S Abraham, Jean-Michel Garant, Bhooma Thiruvahindrapuram, Steven J M Jones, null null, Lisa J Strug, Andrew D Paterson, Lei Sun, Lloyd T Elliott
Canadian COVID-19 host genetics cohort replicates known severity associations. PLoS genetics 20 (3) (2024)
Elika Garg, Paola Arguello-Pascualli, Olga Vishnyakova, Anat R Halevy, Samantha Yoo, Jennifer D Brooks, Shelley B Bull, France Gagnon, Celia M T Greenwood, Rayjean J Hung, Jerald F Lawless, Jordan Lerner- Ellis, Jessica K Dennis, Rohan J S Abraham, Jean-Michel Garant, Bhooma Thiruvahindrapuram, Steven J M Jones, null null, Lisa J Strug, Andrew D Paterson, Lei Sun, Lloyd T Elliott
Canadian COVID-19 host genetics cohort replicates known severity associations. PLoS genetics 20 (3) (2024)
Ramin Nakhli, Katherine Rich, Allen Zhang, Amirali Darbandsari, Elahe Shenasa, Amir Hadjifaradji, Sidney Thiessen, Katy Milne, Steven J M Jones, Jessica Nell McAlpine, Brad H Nelson, C Blake Gilks, Hossein Farahani, Ali Bashashati
VOLTA: an enVironment-aware cOntrastive ceLl represenTation leArning for histopathology. Nature communications 15 (1) (2024)
Amirali Darbandsari, Hossein Farahani, Maryam Asadi, Matthew Wiens, Dawn Cochrane, Ali Khajegili Mirabadi, Amy Jamieson, David Farnell, Pouya Ahmadvand, Maxwell Douglas, Samuel Leung, Purang Abolmaesumi, Steven J M Jones, Aline Talhouk, Stefan Kommoss, C Blake Gilks, David G Huntsman, Naveena Singh, Jessica Nell McAlpine, Ali Bashashati
AI-based histopathology image analysis reveals a distinct subset of endometrial cancers. Nature communications 15 (1) (2024)
Rebecca J Deyell, Yaoqing Shen, Emma Titmuss, Katherine Dixon, Laura M Williamson, Erin D Pleasance, Jessica M T Nelson, Sanna Abbasi, Martin Krzywinski, Linlea Armstrong, Melika Bonakdar, Carolyn Ch'ng, Eric Chuah, Chris Dunham, Alexandra Fok, Martin R Jones, Anna F Lee, Yussanne Ma, Richard A Moore, Andrew J Mungall, Karen L Mungall, Paul C Rogers, Kasmintan A Schrader, Alice Virani, Kathleen Wee, Sean S Young, Yongjun Zhao, Steven J M Jones, Janessa Laskin, Marco A Marra, Shahrad Rod Rassekh
Whole genome and transcriptome integrated analyses guide clinical care of pediatric poor prognosis cancers. Nature communications 15 (1) (2024)
Amirali Darbandsari, Hossein Farahani, Maryam Asadi, Matthew Wiens, Dawn Cochrane, Ali Khajegili Mirabadi, Amy Jamieson, David Farnell, Pouya Ahmadvand, Maxwell Douglas, Samuel Leung, Purang Abolmaesumi, Steven J M Jones, Aline Talhouk, Stefan Kommoss, C Blake Gilks, David G Huntsman, Naveena Singh, Jessica Nell McAlpine, Ali Bashashati
AI-based histopathology image analysis reveals a distinct subset of endometrial cancers. Nature communications 15 (1) (2024)
Emma Titmuss, Irene S Yu, Erin D Pleasance, Laura M Williamson, Karen Mungall, Andrew J Mungall, Daniel J Renouf, Richard Moore, Steven J M Jones, Marco A Marra, Janessa J Laskin, Kerry J Savage
Exploration of Germline Correlates and Risk of Immune-Related Adverse Events in Advanced Cancer Patients Treated with Immune Checkpoint Inhibitors. Current oncology (Toronto, Ont.) 31 (4) (2024)
Ramin Nakhli, Katherine Rich, Allen Zhang, Amirali Darbandsari, Elahe Shenasa, Amir Hadjifaradji, Sidney Thiessen, Katy Milne, Steven J M Jones, Jessica Nell McAlpine, Brad H Nelson, C Blake Gilks, Hossein Farahani, Ali Bashashati
VOLTA: an enVironment-aware cOntrastive ceLl represenTation leArning for histopathology. Nature communications 15 (1) (2024)
Elika Garg, Paola Arguello-Pascualli, Olga Vishnyakova, Anat R Halevy, Samantha Yoo, Jennifer D Brooks, Shelley B Bull, France Gagnon, Celia M T Greenwood, Rayjean J Hung, Jerald F Lawless, Jordan Lerner- Ellis, Jessica K Dennis, Rohan J S Abraham, Jean-Michel Garant, Bhooma Thiruvahindrapuram, Steven J M Jones, null null, Lisa J Strug, Andrew D Paterson, Lei Sun, Lloyd T Elliott
Canadian COVID-19 host genetics cohort replicates known severity associations. PLoS genetics 20 (3) (2024)
Luis F Paulin, Jeremy Fan, Kieran O'Neill, Erin D Pleasance, Vanessa L Porter, Steven J M Jones, Fritz J Sedlazeck
The benefit of a complete reference genome for cancer structural variant analysis. medRxiv : the preprint server for health sciences (2024)
Elika Garg, Paola Arguello-Pascualli, Olga Vishnyakova, Anat R Halevy, Samantha Yoo, Jennifer D Brooks, Shelley B Bull, France Gagnon, Celia M T Greenwood, Rayjean J Hung, Jerald F Lawless, Jordan Lerner- Ellis, Jessica K Dennis, Rohan J S Abraham, Jean-Michel Garant, Bhooma Thiruvahindrapuram, Steven J M Jones, null null, Lisa J Strug, Andrew D Paterson, Lei Sun, Lloyd T Elliott
Canadian COVID-19 host genetics cohort replicates known severity associations. PLoS genetics 20 (3) (2024)
Rebecca J Deyell, Yaoqing Shen, Emma Titmuss, Katherine Dixon, Laura M Williamson, Erin D Pleasance, Jessica M T Nelson, Sanna Abbasi, Martin Krzywinski, Linlea Armstrong, Melika Bonakdar, Carolyn Ch'ng, Eric Chuah, Chris Dunham, Alexandra Fok, Martin R Jones, Anna F Lee, Yussanne Ma, Richard A Moore, Andrew J Mungall, Karen L Mungall, Paul C Rogers, Kasmintan A Schrader, Alice Virani, Kathleen Wee, Sean S Young, Yongjun Zhao, Steven J M Jones, Janessa Laskin, Marco A Marra, Shahrad Rod Rassekh
Whole genome and transcriptome integrated analyses guide clinical care of pediatric poor prognosis cancers. Nature communications 15 (1) (2024)
Emma Titmuss, Irene S Yu, Erin D Pleasance, Laura M Williamson, Karen Mungall, Andrew J Mungall, Daniel J Renouf, Richard Moore, Steven J M Jones, Marco A Marra, Janessa J Laskin, Kerry J Savage
Exploration of Germline Correlates and Risk of Immune-Related Adverse Events in Advanced Cancer Patients Treated with Immune Checkpoint Inhibitors. Current oncology (Toronto, Ont.) 31 (4) (2024)
Luis F Paulin, Jeremy Fan, Kieran O'Neill, Erin D Pleasance, Vanessa L Porter, Steven J M Jones, Fritz J Sedlazeck
The benefit of a complete reference genome for cancer structural variant analysis. medRxiv : the preprint server for health sciences (2024)
Samantha Pollard, Morgan Ehman, Anna Hermansen, Deirdre Weymann, Emanuel Krebs, Cheryl Ho, Howard J Lim, Steven J M Jones, Yvonne Bombard, Timothy P Hanna, Chiquita Hessels, Holly Longstaff, Robert M Cook-Deegan, Tania Bubela, Deirdre Weymann
"I Just Assumed This Was Already Being Done": Canadian Patient Preferences for Enhanced Data Sharing for Precision Oncology. JCO precision oncology 8 (2024)
Emma Titmuss, Irene S Yu, Erin D Pleasance, Laura M Williamson, Karen Mungall, Andrew J Mungall, Daniel J Renouf, Richard Moore, Steven J M Jones, Marco A Marra, Janessa J Laskin, Kerry J Savage
Exploration of Germline Correlates and Risk of Immune-Related Adverse Events in Advanced Cancer Patients Treated with Immune Checkpoint Inhibitors. Current oncology (Toronto, Ont.) 31 (4) (2024)
Xuanjin Cheng, Murathan T Goktas, Laura M Williamson, Martin Krzywinski, David T Mulder, Lucas Swanson, Jill Slind, Jelena Sihvonen, Cynthia R Chow, Amy Carr, Ian Bosdet, Tracy Tucker, Sean Young, Richard Moore, Karen L Mungall, Stephen Yip, Steven J M Jones
Enhancing clinical genomic accuracy with panelGC: a novel metric and tool for quantifying and monitoring GC biases in hybridization capture panel sequencing. Briefings in bioinformatics 25 (5) (2024)
Emma Titmuss, Irene S Yu, Erin D Pleasance, Laura M Williamson, Karen Mungall, Andrew J Mungall, Daniel J Renouf, Richard Moore, Steven J M Jones, Marco A Marra, Janessa J Laskin, Kerry J Savage
Exploration of Germline Correlates and Risk of Immune-Related Adverse Events in Advanced Cancer Patients Treated with Immune Checkpoint Inhibitors. Current oncology (Toronto, Ont.) 31 (4) (2024)
Amirali Darbandsari, Hossein Farahani, Maryam Asadi, Matthew Wiens, Dawn Cochrane, Ali Khajegili Mirabadi, Amy Jamieson, David Farnell, Pouya Ahmadvand, Maxwell Douglas, Samuel Leung, Purang Abolmaesumi, Steven J M Jones, Aline Talhouk, Stefan Kommoss, C Blake Gilks, David G Huntsman, Naveena Singh, Jessica Nell McAlpine, Ali Bashashati
AI-based histopathology image analysis reveals a distinct subset of endometrial cancers. Nature communications 15 (1) (2024)
Luis F Paulin, Jeremy Fan, Kieran O'Neill, Erin D Pleasance, Vanessa L Porter, Steven J M Jones, Fritz J Sedlazeck
The benefit of a complete reference genome for cancer structural variant analysis. medRxiv : the preprint server for health sciences (2024)
Ana Nikolic, Francesca Maule, Anna Bobyn, Katrina Ellestad, Seungil Paik, Sajid A Marhon, Parinaz Mehdipour, Xueqing Lun, Huey-Miin Chen, Claire Mallard, Alexander J Hay, Michael J Johnston, Christopher J Gafuik, Franz J Zemp, Yaoqing Shen, Nicoletta Ninkovic, Katalin Osz, Elodie Labit, N Daniel Berger, Duncan K Brownsey, John J Kelly, Jeff Biernaskie, Peter B Dirks, Darren J Derksen, Steven J M Jones, Donna L Senger, Jennifer A Chan, Douglas J Mahoney, Daniel D De Carvalho, Marco Gallo
macroH2A2 antagonizes epigenetic programs of stemness in glioblastoma. Nature communications 14 (1) (2023)
Zhiping Li, Xuanmao Jiao, A Gordon Robertson, Gabriele Di Sante, Anthony W Ashton, Agnese DiRocco, Min Wang, Jun Zhao, Sankar Addya, Chenguang Wang, Peter A McCue, Andrew P South, Carlos Cordon-Cardo, Runzhi Liu, Kishan Patel, Rasha Hamid, Jorim Parmar, James B DuHadaway, Steven J M Jones, Mathew C Casimiro, Nikolaus Schultz, Andrew Kossenkov, Lai Yee Phoon, Hao Chen, Li Lan, Yunguang Sun, Kenneth A Iczkowski, Hallgeir Rui, Richard G Pestell
The DACH1 gene is frequently deleted in prostate cancer, restrains prostatic intraepithelial neoplasia, decreases DNA damage repair, and predicts therapy responses. Oncogene (2023)
E Titmuss, K Milne, M R Jones, T Ng, J T Topham, S D Brown, D F Schaeffer, S Kalloger, D Wilson, R D Corbett, L M Williamson, K Mungall, Andrew J Mungall, R A Holt, B H Nelson, Steven J M Jones, J Laskin, H J Lim, Marco A Marra
Immune Activation following Irbesartan Treatment in a Colorectal Cancer Patient: A Case Study. International journal of molecular sciences 24 (6) (2023)
Elie J Ritch, Cameron Herberts, Evan W Warner, Sarah W S Ng, Edmond M Kwan, Jack V W Bacon, Cecily Q Bernales, Elena Schönlau, Nicolette M Fonseca, Veda N Giri, Corinne Maurice-Dror, Gillian Vandekerkhove, Steven J M Jones, Kim N Chi, Alexander W Wyatt
A generalizable machine learning framework for classifying DNA repair defects using ctDNA exomes. NPJ precision oncology 7 (1) (2023)
Vanessa L Porter, Kieran O'Neill, Signe MacLennan, Richard D Corbett, Michelle Ng, Luka Culibrk, Zeid Hamadeh, Marissa Iden, Rachel Schmidt, Shirng-Wern Tsaih, Glenn Chang, Jeremy Fan, Ka Ming Nip, Vahid Akbari, Simon K Chan, James Hopkins, Richard A Moore, Eric Chuah, Karen L Mungall, Andrew J Mungall, Inanc Birol, Steven J M Jones, Janet S Rader, Marco A Marra
Genomic structures and regulation patterns at HPV integration sites in cervical cancer. bioRxiv : the preprint server for biology (2023)
Erica S Tsang, Veronika Csizmok, Laura M Williamson, Erin Pleasance, James T Topham, Joanna M Karasinska, Emma Titmuss, Kasmintan A Schrader, Stephen Yip, Basile Tessier-Cloutier, Karen Mungall, Tony Ng, Sophie Sun, Howard J Lim, Jonathan M Loree, Janessa Laskin, Marco A Marra, Steven J M Jones, David F Schaeffer, Daniel J Renouf
Homologous recombination deficiency signatures in gastrointestinal and thoracic cancers correlate with platinum therapy duration. NPJ precision oncology 7 (1) (2023)
Katherine Dixon, Yaoqing Shen, Kieran O'Neill, Karen L Mungall, Simon Chan, Steve Bilobram, Wei Zhang, Marjorie Bezeau, Alshanee Sharma, Alexandra Fok, Andrew J Mungall, Richard Moore, Ian Bosdet, My Linh Thibodeau, Sophie Sun, Stephen Yip, Kasmintan A Schrader, Steven J M Jones
Defining the heterogeneity of unbalanced structural variation underlying breast cancer susceptibility by nanopore genome sequencing. European journal of human genetics : EJHG (2023)
Rahul Krishan Arora, Logan Haynes, Mehul Kumar, Reid McNeil, Jahanshah Ashkani, Steven C Nakoneshny, T Wayne Matthews, Shamir Chandarana, Robert D Hart, Steven J M Jones, Joseph C Dort, Doha Itani, Ayan Chanda, Pinaki Bose
NCBP2 and TFRC are novel prognostic biomarkers in oral squamous cell carcinoma. Cancer gene therapy (2023)
Zhiping Li, Xuanmao Jiao, A Gordon Robertson, Gabriele Di Sante, Anthony W Ashton, Agnese DiRocco, Min Wang, Jun Zhao, Sankar Addya, Chenguang Wang, Peter A McCue, Andrew P South, Carlos Cordon-Cardo, Runzhi Liu, Kishan Patel, Rasha Hamid, Jorim Parmar, James B DuHadaway, Steven J M Jones, Mathew C Casimiro, Nikolaus Schultz, Andrew Kossenkov, Lai Yee Phoon, Hao Chen, Li Lan, Yunguang Sun, Kenneth A Iczkowski, Hallgeir Rui, Richard G Pestell
The DACH1 gene is frequently deleted in prostate cancer, restrains prostatic intraepithelial neoplasia, decreases DNA damage repair, and predicts therapy responses. Oncogene (2023)
Richard G Pestell, Zhiping Li, Xuanmao Jiao, A Robertson, Gabriele Di Sante, Anthony Ashton, Agnese DiRocco, Min Wang, Jun Zhao, Sankar Addya, Chenguang Wang, Peter McCue, Andrew South, Carlos Cordon-Cardo, Runzhi Liu, Kishan Patel, Rasha Hamid, Jorim Parmar, James DuHadaway, Steven J M Jones, Mathew Casimiro, Nikolaus Schultz, Andrew Kossenkov, Lai Yee Phoon, Hao Chen, Li Lan, Yunguang Sun, Kenneth Iczkowski, Hallgeir Rui
The DACH1 gene is frequently deleted in prostate cancer, restrains prostatic intraepithelial neoplasia, decreases DNA damage repair, and predicts therapy responses. Research square (2023)
Joan Miguel Romero, Emma Titmuss, Yifan Wang, James Vafiadis, Alain Pacis, Gun Ho Jang, Amy Zhang, Bryn Golesworthy, Tatiana Lenko, Laura M Williamson, Barbara Grünwald, Grainne M O'Kane, Steven J M Jones, Marco A Marra, Julie M Wilson, Steven Gallinger, Janessa Laskin, George Zogopoulos
Chemokine expression predicts T cell-inflammation and improved survival with checkpoint inhibition across solid cancers. NPJ precision oncology 7 (1) (2023)
Richard G Pestell, Zhiping Li, Xuanmao Jiao, A Robertson, Gabriele Di Sante, Anthony Ashton, Agnese DiRocco, Min Wang, Jun Zhao, Sankar Addya, Chenguang Wang, Peter McCue, Andrew South, Carlos Cordon-Cardo, Runzhi Liu, Kishan Patel, Rasha Hamid, Jorim Parmar, James DuHadaway, Steven J M Jones, Mathew Casimiro, Nikolaus Schultz, Andrew Kossenkov, Lai Yee Phoon, Hao Chen, Li Lan, Yunguang Sun, Kenneth Iczkowski, Hallgeir Rui
The DACH1 gene is frequently deleted in prostate cancer, restrains prostatic intraepithelial neoplasia, decreases DNA damage repair, and predicts therapy responses. Research square (2023)
Zhiping Li, Xuanmao Jiao, A Gordon Robertson, Gabriele Di Sante, Anthony W Ashton, Agnese DiRocco, Min Wang, Jun Zhao, Sankar Addya, Chenguang Wang, Peter A McCue, Andrew P South, Carlos Cordon-Cardo, Runzhi Liu, Kishan Patel, Rasha Hamid, Jorim Parmar, James B DuHadaway, Steven J M Jones, Mathew C Casimiro, Nikolaus Schultz, Andrew Kossenkov, Lai Yee Phoon, Hao Chen, Li Lan, Yunguang Sun, Kenneth A Iczkowski, Hallgeir Rui, Richard G Pestell
The DACH1 gene is frequently deleted in prostate cancer, restrains prostatic intraepithelial neoplasia, decreases DNA damage repair, and predicts therapy responses. Oncogene (2023)
E Titmuss, K Milne, M R Jones, T Ng, J T Topham, S D Brown, D F Schaeffer, S Kalloger, D Wilson, R D Corbett, L M Williamson, K Mungall, Andrew J Mungall, R A Holt, B H Nelson, Steven J M Jones, J Laskin, H J Lim, Marco A Marra
Immune Activation following Irbesartan Treatment in a Colorectal Cancer Patient: A Case Study. International journal of molecular sciences 24 (6) (2023)
Richard G Pestell, Zhiping Li, Xuanmao Jiao, A Robertson, Gabriele Di Sante, Anthony Ashton, Agnese DiRocco, Min Wang, Jun Zhao, Sankar Addya, Chenguang Wang, Peter McCue, Andrew South, Carlos Cordon-Cardo, Runzhi Liu, Kishan Patel, Rasha Hamid, Jorim Parmar, James DuHadaway, Steven J M Jones, Mathew Casimiro, Nikolaus Schultz, Andrew Kossenkov, Lai Yee Phoon, Hao Chen, Li Lan, Yunguang Sun, Kenneth Iczkowski, Hallgeir Rui
The DACH1 gene is frequently deleted in prostate cancer, restrains prostatic intraepithelial neoplasia, decreases DNA damage repair, and predicts therapy responses. Research square (2023)
Zhiping Li, Xuanmao Jiao, A Gordon Robertson, Gabriele Di Sante, Anthony W Ashton, Agnese DiRocco, Min Wang, Jun Zhao, Sankar Addya, Chenguang Wang, Peter A McCue, Andrew P South, Carlos Cordon-Cardo, Runzhi Liu, Kishan Patel, Rasha Hamid, Jorim Parmar, James B DuHadaway, Steven J M Jones, Mathew C Casimiro, Nikolaus Schultz, Andrew Kossenkov, Lai Yee Phoon, Hao Chen, Li Lan, Yunguang Sun, Kenneth A Iczkowski, Hallgeir Rui, Richard G Pestell
The DACH1 gene is frequently deleted in prostate cancer, restrains prostatic intraepithelial neoplasia, decreases DNA damage repair, and predicts therapy responses. Oncogene (2023)
Elie J Ritch, Cameron Herberts, Evan W Warner, Sarah W S Ng, Edmond M Kwan, Jack V W Bacon, Cecily Q Bernales, Elena Schönlau, Nicolette M Fonseca, Veda N Giri, Corinne Maurice-Dror, Gillian Vandekerkhove, Steven J M Jones, Kim N Chi, Alexander W Wyatt
A generalizable machine learning framework for classifying DNA repair defects using ctDNA exomes. NPJ precision oncology 7 (1) (2023)
E Titmuss, K Milne, M R Jones, T Ng, J T Topham, S D Brown, D F Schaeffer, S Kalloger, D Wilson, R D Corbett, L M Williamson, K Mungall, Andrew J Mungall, R A Holt, B H Nelson, Steven J M Jones, J Laskin, H J Lim, Marco A Marra
Immune Activation following Irbesartan Treatment in a Colorectal Cancer Patient: A Case Study. International journal of molecular sciences 24 (6) (2023)
Liam D Hendrikse, Parthiv Haldipur, Olivier Saulnier, Jake Millman, Alexandria H Sjoboen, Anders Wilder Erickson, Winnie Ong, Victor Gordon, Ludivine Coudière-Morrison, Audrey L Mercier, Mohammad Shokouhian, Raúl A Suárez, Michelle Ly, Stephanie Borlase, David S Scott, Maria C Vladoiu, Hamza Farooq, Olga Sirbu, Takuma Nakashima, Shohei Nambu, Yusuke Funakoshi, Alec Bahcheli, J Javier Diaz-Mejia, Joseph Golser, Kathleen Bach, Tram Phuong-Bao, Patryk Skowron, Evan Y Wang, Sachin A Kumar, Polina Balin, Abhirami Visvanathan, John J Y Lee, Ramy Ayoub, Xin Chen, Xiaodi Chen, Karen L Mungall, Betty Luu, Pierre Bérubé, Yu C Wang, Stefan M Pfister, Seung-Ki Kim, Olivier O Delattre, Franck Bourdeaut, François Doz, Julien Masliah-Planchon, Wieslawa A Grajkowska, James Loukides, Peter B Dirks, Michelle Fèvre-Montange, Anne Jouvet, Pim J French, Johan M Kros, Karel Zitterbart, Swneke D Bailey, Charles G Eberhart, Amulya A N Rao, Caterina Giannini, James M Olson, Miklós Garami, Peter Hauser, Joanna J Phillips, Young S Ra, Carmen de Torres, Jaume Mora, Kay K W Li, Ho-Keung Ng, Wai S Poon, Ian F Pollack, Enrique López-Aguilar, G Yancey Gillespie, Timothy E Van Meter, Tomoko Shofuda, Rajeev Vibhakar, Reid C Thompson, Michael K Cooper, Joshua B Rubin, Toshihiro Kumabe, Shin Jung, Boleslaw Lach, Achille Iolascon, Veronica Ferrucci, Pasqualino de Antonellis, Massimo Zollo, Giuseppe Cinalli, Shenandoah Robinson, Duncan S Stearns, Erwin G Van Meir, Paola Porrati, Gaetano Finocchiaro, Maura Massimino, Carlos G Carlotti, Claudia C Faria, Martine F Roussel, Frederick Boop, Jennifer A Chan, Kimberly A Aldinger, Ferechte Razavi, Evelina Silvestri, Roger E McLendon, Eric Michael Thompson, Marc Ansari, Maria L Garre, Fernando Chico, Pilar Eguía, Mario Pérezpeña, A Sorana Morrissy, Florence M G Cavalli, Xiaochong Wu, Craig Daniels, Jeremy N Rich, Steven J M Jones, Richard A Moore, Marco A Marra, Xi Huang, Jüri Reimand, Poul H Sorensen, Robert J Wechsler-Reya, William A Weiss, Trevor J Pugh, Livia Garzia, Claudia L Kleinman, Lincoln D Stein, Nada Jabado, David Malkin, Olivier Ayrault, Jeffrey A Golden, David W Ellison, Bradley W Doble, Vijay Ramsawami, Tamra E Werbowetski-Ogilvie, Hiromichi Suzuki, Kathleen J Millen, Michael D Taylor
Failure of human rhombic lip differentiation underlies medulloblastoma formation. Nature 609 (7929) (2022)
Kristina K Gagalova, Justin G A Whitehill, Luka Culibrk, Diana Lin, Véronique Lévesque-Tremblay, Christopher I Keeling, Lauren Coombe, Macaire Man Saint Yuen, Inanc Birol, Joerg Bohlmann, Steven J M Jones
The genome of the forest insect pest Pissodes strobi reveals genome expansion and evidence of a Wolbachia endosymbiont. G3 (Bethesda, Md.) 12 (4) (2022)
Liam D Hendrikse, Parthiv Haldipur, Olivier Saulnier, Jake Millman, Alexandria H Sjoboen, Anders Wilder Erickson, Winnie Ong, Victor Gordon, Ludivine Coudière-Morrison, Audrey L Mercier, Mohammad Shokouhian, Raúl A Suárez, Michelle Ly, Stephanie Borlase, David S Scott, Maria C Vladoiu, Hamza Farooq, Olga Sirbu, Takuma Nakashima, Shohei Nambu, Yusuke Funakoshi, Alec Bahcheli, J Javier Diaz-Mejia, Joseph Golser, Kathleen Bach, Tram Phuong-Bao, Patryk Skowron, Evan Y Wang, Sachin A Kumar, Polina Balin, Abhirami Visvanathan, John J Y Lee, Ramy Ayoub, Xin Chen, Xiaodi Chen, Karen L Mungall, Betty Luu, Pierre Bérubé, Yu C Wang, Stefan M Pfister, Seung-Ki Kim, Olivier O Delattre, Franck Bourdeaut, François Doz, Julien Masliah-Planchon, Wieslawa A Grajkowska, James Loukides, Peter B Dirks, Michelle Fèvre-Montange, Anne Jouvet, Pim J French, Johan M Kros, Karel Zitterbart, Swneke D Bailey, Charles G Eberhart, Amulya A N Rao, Caterina Giannini, James M Olson, Miklós Garami, Peter Hauser, Joanna J Phillips, Young S Ra, Carmen de Torres, Jaume Mora, Kay K W Li, Ho-Keung Ng, Wai S Poon, Ian F Pollack, Enrique López-Aguilar, G Yancey Gillespie, Timothy E Van Meter, Tomoko Shofuda, Rajeev Vibhakar, Reid C Thompson, Michael K Cooper, Joshua B Rubin, Toshihiro Kumabe, Shin Jung, Boleslaw Lach, Achille Iolascon, Veronica Ferrucci, Pasqualino de Antonellis, Massimo Zollo, Giuseppe Cinalli, Shenandoah Robinson, Duncan S Stearns, Erwin G Van Meir, Paola Porrati, Gaetano Finocchiaro, Maura Massimino, Carlos G Carlotti, Claudia C Faria, Martine F Roussel, Frederick Boop, Jennifer A Chan, Kimberly A Aldinger, Ferechte Razavi, Evelina Silvestri, Roger E McLendon, Eric Michael Thompson, Marc Ansari, Maria L Garre, Fernando Chico, Pilar Eguía, Mario Pérezpeña, A Sorana Morrissy, Florence M G Cavalli, Xiaochong Wu, Craig Daniels, Jeremy N Rich, Steven J M Jones, Richard A Moore, Marco A Marra, Xi Huang, Jüri Reimand, Poul H Sorensen, Robert J Wechsler-Reya, William A Weiss, Trevor J Pugh, Livia Garzia, Claudia L Kleinman, Lincoln D Stein, Nada Jabado, David Malkin, Olivier Ayrault, Jeffrey A Golden, David W Ellison, Bradley W Doble, Vijay Ramsawami, Tamra E Werbowetski-Ogilvie, Hiromichi Suzuki, Kathleen J Millen, Michael D Taylor
Author Correction: Failure of human rhombic lip differentiation underlies medulloblastoma formation. Nature (2022)
Kristina K Gagalova, Rene L Warren, Lauren Coombe, Johnathan Wong, Ka Ming Nip, Macaire Man Saint Yuen, Justin G A Whitehill, Jose M Celedon, Carol Ritland, Greg A Taylor, Dean Cheng, Patrick Plettner, S Austin Hammond, Hamid Mohamadi, Yongjun Zhao, Richard A Moore, Andrew J Mungall, Brian Boyle, Jérôme Laroche, Joan Cottrell, John J Mackay, Manuel Lamothe, Sébastien Gérardi, Nathalie Isabel, Nathalie Pavy, Steven J M Jones, Joerg Bohlmann, Jean Bousquet, Inanc Birol
Spruce giga-genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes. The Plant journal : for cell and molecular biology 111 (5) (2022)
Hossein Farahani, Jeffrey Boschman, David Farnell, Amirali Darbandsari, Allen Zhang, Pouya Ahmadvand, Steven J M Jones, David Huntsman, Martin Köbel, C Blake Gilks, Naveena Singh, Ali Bashashati
Deep learning-based histotype diagnosis of ovarian carcinoma whole-slide pathology images. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 35 (12) (2022)
Kilannin Krysiak, Arpad M Danos, Susanna Kiwala, Joshua F McMichael, Adam C Coffman, Erica K Barnell, Lana Sheta, Jason Saliba, Cameron J Grisdale, Lynzey Kujan, Shahil Pema, Jake Lever, Nicholas C Spies, Andreea Chiorean, Damian T Rieke, Kaitlin A Clark, Payal Jani, Hideaki Takahashi, Peter Horak, Deborah I Ritter, Xin Zhou, Benjamin J Ainscough, Sean Delong, Mario Lamping, Alex R Marr, Brian V Li, Wan-Hsin Lin, Panieh Terraf, Yasser Salama, Katie M Campbell, Kirsten M Farncombe, Jianling Ji, Xiaonan Zhao, Xinjie Xu, Rashmi Kanagal-Shamana, Kelsy C Cotto, Zachary L Skidmore, Jason R Walker, Jinghui Zhang, Aleksandar Milosavljevic, Ronak Y Patel, Rachel H Giles, Raymond H Kim, Lynn M Schriml, Elaine R Mardis, Steven J M Jones, Gordana Raca, Shruti Rao, Subha Madhavan, Alex H Wagner, Malachi Griffith, Malachi Griffith
A community approach to the cancer-variant-interpretation bottleneck. Nature cancer 3 (5) (2022)
Vahid Akbari, Jean-Michel Garant, Kieran O'Neill, Pawan Pandoh, Richard Moore, Marco A Marra, Martin Hirst, Steven J M Jones
Genome-wide detection of imprinted differentially methylated regions using nanopore sequencing. eLife 11 (2022)
James T Topham, Erica S Tsang, Joanna M Karasinska, Andrew Metcalfe, Hassan Ali, Steve E Kalloger, Veronika Csizmok, Laura M Williamson, Emma Titmuss, Karina Nielsen, Gian Luca Negri, Sandra Elizabeth Spencer, Gun Ho Jang, Robert E Denroche, Hui-Li Wong, Grainne M O'Kane, Richard A Moore, Andrew J Mungall, Jonathan M Loree, Faiyaz Notta, Julie M Wilson, Oliver F Bathe, Patricia A Tang, Rachel Goodwin, Gregg B Morin, Jennifer J Knox, Steven Gallinger, Janessa Laskin, Marco A Marra, Steven J M Jones, David F Schaeffer, Daniel J Renouf
Integrative analysis of KRAS wildtype metastatic pancreatic ductal adenocarcinoma reveals mutation and expression-based similarities to cholangiocarcinoma. Nature communications 13 (1) (2022)
Caralyn Reisle, Laura M Williamson, Erin Pleasance, Anna Davies, Brayden Pellegrini, Dustin W Bleile, Karen L Mungall, Eric Chuah, Martin R Jones, Yussanne Ma, Eleanor Lewis, Isaac Beckie, David Pham, Raphael Matiello Pletz, Amir Muhammadzadeh, Brandon M Pierce, Jacky Li, Ross Stevenson, Hansen Wong, Lance Bailey, Abbey Reisle, Matthew Douglas, Melika Bonakdar, Jessica M T Nelson, Cameron J Grisdale, Martin Krzywinski, Ana Fisic, Teresa Mitchell, Daniel J Renouf, Stephen Yip, Janessa Laskin, Marco A Marra, Steven J M Jones
A platform for oncogenomic reporting and interpretation. Nature communications 13 (1) (2022)
Daniel R Evans, Ying Qiao, Brett Trost, Kristina Calli, Sally Martell, Steven J M Jones, Stephen W Scherer, M E Suzanne Lewis
Complex Autism Spectrum Disorder with Epilepsy, Strabismus and Self-Injurious Behaviors in a Patient with a De Novo Heterozygous POLR2A Variant. Genes 13 (3) (2022)
Jasleen Dhaliwal, Ying Qiao, Kristina Calli, Sally Martell, Simone Race, Chieko Chijiwa, Armansa Glodjo, Steven J M Jones, Evica Rajcan-Separovic, Stephen W Scherer, Suzanne Lewis
Contribution of Multiple Inherited Variants to Autism Spectrum Disorder (ASD) in a Family with 3 Affected Siblings. Genes 12 (7) (2021)
Laura M Williamson, Craig M Rive, Daniela Di Francesco, Emma Titmuss, Hye-Jung E Chun, Scott D Brown, Katy Milne, Erin Pleasance, Anna F Lee, Stephen Yip, Daniel G Rosenbaum, Martin Hasselblatt, Pascal D Johann, Marcel Kool, Melissa Harvey, David Dix, Daniel J Renouf, Robert A Holt, Brad H Nelson, Martin Hirst, Steven J M Jones, Janessa Laskin, Shahrad R Rassekh, Rebecca J Deyell, Marco A Marra
Clinical response to nivolumab in an INI1-deficient pediatric chordoma correlates with immunogenic recognition of brachyury. NPJ precision oncology 5 (1) (2021)
Julia R Naso, Adrian B Levine, Hossein Farahani, Lucian R Chirieac, Sanja Dacic, Joanne L Wright, Chi Lai, Hui-Min Yang, Steven J M Jones, Ali Bashashati, Stephen Yip, Andrew Churg
Deep-learning based classification distinguishes sarcomatoid malignant mesotheliomas from benign spindle cell mesothelial proliferations. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 34 (11) (2021)
Patryk Skowron, Hamza Farooq, Florence M G Cavalli, A Sorana Morrissy, Michelle Ly, Liam D Hendrikse, Evan Y Wang, Haig Hugo Vrej Djambazian, Helen Zhu, Karen L Mungall, Quang M Trinh, Tina Zheng, Shizhong Dai, Ana S Guerreiro Stucklin, Maria C Vladoiu, Vernon Fong, Borja L Holgado, Carolina Nor, Xiaochong Wu, Diala Abd-Rabbo, Pierre Bérubé, Yu Chang Wang, Betty Luu, Raul A Suarez, Avesta Rastan, Aaron H Gillmor, John J Y Lee, Xiao Yun Zhang, Craig Daniels, Peter B Dirks, David Malkin, Eric Bouffet, Uri Tabori, James Loukides, François P Doz, Franck Bourdeaut, Olivier O Delattre, Julien Masliah-Planchon, Olivier Ayrault, Seung-Ki Kim, David Meyronet, Wieslawa A Grajkowska, Carlos G Carlotti, Carmen de Torres, Jaume Mora, Charles G Eberhart, Erwin G Van Meir, Toshihiro Kumabe, Pim J French, Johan M Kros, Nada Jabado, Boleslaw Lach, Ian F Pollack, Ronald L Hamilton, Amulya A Nageswara Rao, Caterina Giannini, James M Olson, László Bognár, Almos Klekner, Karel Zitterbart, Joanna J Phillips, Reid C Thompson, Michael K Cooper, Joshua B Rubin, Linda M Liau, Miklós Garami, Peter Hauser, Kay Ka Wai Li, Ho-Keung Ng, Wai Sang Poon, G Yancey Gillespie, Jennifer A Chan, Shin Jung, Roger E McLendon, Eric M Thompson, David Zagzag, Rajeev Vibhakar, Young Shin Ra, Maria Luisa Garre, Ulrich Schüller, Tomoko Shofuda, Claudia C Faria, Enrique López-Aguilar, Gelareh Zadeh, Chi-Chung Hui, Vijay Ramsawami, Swneke D Bailey, Steven J M Jones, Andrew J Mungall, Richard A Moore, John A Calarco, Lincoln D Stein, Gary D Baider, Jüri Reimand, Jiannis Ragoussis, William A Weiss, Marco A Marra, Hiromichi Suzuki, Michael D Taylor
The transcriptional landscape of Shh medulloblastoma. Nature communications 12 (1) (2021)
Kris A Christensen, Eric B Rondeau, Dionne Sakhrani, Carlo A Biagi, Hollie Johnson, Jay Joshi, Anne-Marie Flores, Sreeja Leelakumari, Richard Moore, Pawan K Pandoh, Ruth E Withler, Terry D Beacham, Rosalind A Leggatt, Carolyn M Tarpey, Lisa W Seeb, James E Seeb, Steven J M Jones, Robert H Devlin, Ben F Koop
The pink salmon genome: Uncovering the genomic consequences of a two-year life cycle. PloS one 16 (12) (2021)
Ana Nikolic, Divya Singhal, Katrina Ellestad, Michael J Johnston, Yaoqing Shen, Aaron Gillmor, Sorana Morrissy, J Gregory Cairncross, Steven J M Jones, Mathieu Lupien, Jennifer A Chan, Paola Neri, Nizar Bahlis, Marco Gallo
Copy-scAT: Deconvoluting single-cell chromatin accessibility of genetic subclones in cancer. Science advances 7 (42) (2021)
T Roderick Docking, Jeremy D K Parker, Martin Jädersten, Gerben Duns, Linda Chang, Jihong Jiang, Jessica A Pilsworth, Lucas A Swanson, Simon K Chan, Readman Chiu, Ka Ming Nip, Samantha Mar, Angela Mo, Xuan Wang, Sergio Martinez-Høyer, Ryan J Stubbins, Karen L Mungall, Andrew J Mungall, Richard A Moore, Steven J M Jones, Inanc Birol, Marco A Marra, Donna Hogge, Aly Karsan
A clinical transcriptome approach to patient stratification and therapy selection in acute myeloid leukemia. Nature communications 12 (1) (2021)
Vahid Akbari, Jean-Michel Garant, Kieran O'Neill, Pawan Pandoh, Richard Moore, Marco A Marra, Martin Hirst, Steven J M Jones
Megabase-scale methylation phasing using nanopore long reads and NanoMethPhase. Genome biology 22 (1) (2021)
Alexandra Pender, Emma Titmuss, Erin D Pleasance, Kevin Y Fan, Hillary Pearson, Scott D Brown, Cameron J Grisdale, James T Topham, Yaoqing Shen, Melika Bonakdar, Gregory A Taylor, Laura M Williamson, Andrew J Mungall, Eric Chuah, Richard A Moore, Jean-Michel Lavoie, Stephen Yip, Howard Lim, Daniel J Renouf, Sophie Sun, Robert A Holt, Steven J M Jones, Marco A Marra, Janessa Laskin
Genome and Transcriptome Biomarkers of Response to Immune Checkpoint Inhibitors in Advanced Solid Tumors. Clinical cancer research : an official journal of the American Association for Cancer Research 27 (1) (2020)
James T Topham, Joanna M Karasinska, Michael Kuan-Ching Lee, Veronika Csizmok, Laura M Williamson, Gun Ho Jang, Robert E Denroche, Erica S Tsang, Steve E Kalloger, Hui-Li Wong, Grainne M O'Kane, Richard A Moore, Andrew J Mungall, Faiyaz Notta, Jonathan M Loree, Julie M Wilson, Oliver F Bathe, Patricia A Tang, Rachel Goodwin, Jennifer J Knox, Steven Gallinger, Janessa Laskin, Marco A Marra, Steven J M Jones, Daniel J Renouf, David F Schaeffer
Subtype-Discordant Pancreatic Ductal Adenocarcinoma Tumors Show Intermediate Clinical and Molecular Characteristics. Clinical cancer research : an official journal of the American Association for Cancer Research 27 (1) (2020)
Michelle Chan-Seng-Yue, Jaeseung C Kim, Gavin W Wilson, Karen Ng, Eugenia Flores Figueroa, Grainne M O'Kane, Ashton A Connor, Robert E Denroche, Robert C Grant, Jessica McLeod, Julie M Wilson, Gun Ho Jang, Amy Zhang, Anna Dodd, Sheng-Ben Liang, Ayelet Borgida, Dianne Chadwick, Sangeetha Kalimuthu, Ilinca Lungu, John M S Bartlett, Paul M Krzyzanowski, Vandana Sandhu, Hervé Tiriac, Fieke E M Froeling, Joanna M Karasinska, James T Topham, Daniel J Renouf, David F Schaeffer, Steven J M Jones, Marco A Marra, Janessa Laskin, Runjan Chetty, Lincoln D Stein, George Zogopoulos, Benjamin Haibe-Kains, Peter J Campbell, David A Tuveson, Jennifer J Knox, Sandra E Fischer, Steven Gallinger, Faiyaz Notta
Transcription phenotypes of pancreatic cancer are driven by genomic events during tumor evolution. Nature genetics 52 (2) (2020)
Erica S Tsang, Cameron J Grisdale, Erin D Pleasance, James T Topham, Andrew J Mungall, Caralyn Reisle, Caleb Choo, Marcus Carreira, Reanne Bowlby, Joanna M Karasinska, Daniel MacMillan, Laura M Williamson, Eric Chuah, Richard A Moore, Yongjun Zhao, Basile Tessier-Cloutier, Tony Ng, Sophie Sun, Howard J Lim, David F Schaeffer, Daniel J Renouf, Stephen Yip, Janessa Laskin, Marco A Marra, Steven J M Jones, Jonathan M Loree
Uncovering Clinically Relevant Gene Fusions with Integrated Genomic and Transcriptomic Profiling of Metastatic Cancers. Clinical cancer research : an official journal of the American Association for Cancer Research 27 (2) (2020)
Erica S Tsang, James T Topham, Joanna M Karasinska, Michael Kuan-Ching Lee, Laura M Williamson, Shehara Mendis, Robert E Denroche, Gun Ho Jang, Steve E Kalloger, Richard A Moore, Andrew J Mungall, Oliver F Bathe, Patricia A Tang, Faiyaz Notta, Julie M Wilson, Janessa Laskin, Grainne M O'Kane, Jennifer J Knox, Rachel A Goodwin, Jonathan M Loree, Steven J M Jones, Marco A Marra, Steven Gallinger, David F Schaeffer, Daniel J Renouf
Delving into Early-onset Pancreatic Ductal Adenocarcinoma: How Does Age Fit In? Clinical cancer research : an official journal of the American Association for Cancer Research 27 (1) (2020)
James T Topham, Emma Titmuss, Erin D Pleasance, Laura M Williamson, Joanna M Karasinska, Luka Culibrk, Michael Kuan-Ching Lee, Shehara Mendis, Robert E Denroche, Gun-Ho Jang, Steve E Kalloger, Hui-Li Wong, Richard A Moore, Andrew J Mungall, Grainne M O'Kane, Jennifer J Knox, Steven Gallinger, Jonathan M Loree, Dixie L Mager, Janessa Laskin, Marco A Marra, Steven J M Jones, David F Schaeffer, Daniel J Renouf
Endogenous Retrovirus Transcript Levels Are Associated with Immunogenic Signatures in Multiple Metastatic Cancer Types. Molecular cancer therapeutics 19 (9) (2020)
Astrid De Boeck, Bo Young Ahn, Charlotte D'Mello, Xueqing Lun, Shyam V Menon, Mana M Alshehri, Frank Szulzewsky, Yaoqing Shen, Lubaba Khan, Ngoc Ha Dang, Elliott M Reichardt, Kimberly-Ann Goring, Jennifer King, Cameron J Grisdale, Natalie Grinshtein, Dolores Hambardzumyan, Karlyne M Reilly, Michael D Blough, J Gregory Cairncross, V Wee Yong, Marco A Marra, Steven J M Jones, David R Kaplan, Kathy D McCoy, Eric C Holland, Pinaki Bose, Jennifer A Chan, Stephen M Robbins, Donna L Senger
Glioma-derived IL-33 orchestrates an inflammatory brain tumor microenvironment that accelerates glioma progression. Nature communications 11 (1) (2020)
Katherine Dixon, Sean Young, Yaoqing Shen, My Linh Thibodeau, Alexandra Fok, Erin Pleasance, Eric Zhao, Martin Jones, Geraldine Aubert, Linlea Armstrong, Alice Virani, Deirdre Weymann, Karen A Gelmon, Dan Renouf, Stephen Chia, Ian Bosdet, S Rod Rassekh, Rebecca J Deyell, Stephen Yip, Ana Fisic, Emma Titmuss, Shirin Abadi, Steven J M Jones, Sophie Sun, Aly Karsan, Marco A Marra, Janessa Laskin, Howard Lim, Kasmintan A Schrader
Establishing a Framework for the Clinical Translation of Germline Findings in Precision Oncology. JNCI cancer spectrum 4 (5) (2020)
Alessia Gagliardi, Vanessa L Porter, Zusheng Zong, Reanne Bowlby, Emma Titmuss, Constance Namirembe, Nicholas B Griner, Hilary Petrello, Jay Bowen, Simon K Chan, Luka Culibrk, Teresa M Darragh, Mark H Stoler, Thomas C Wright, Patee Gesuwan, Maureen A Dyer, Yussanne Ma, Karen L Mungall, Steven J M Jones, Carolyn Nakisige, Karen Novik, Jackson Orem, Martin Origa, Julie M Gastier-Foster, Robert Yarchoan, Corey Casper, Gordon B Mills, Janet S Rader, Akinyemi I Ojesina, Daniela S Gerhard, Andrew J Mungall, Marco A Marra
Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade-specific epigenome and transcriptome landscapes. Nature genetics 52 (8) (2020)
Alexandra Garancher, Hiromichi Suzuki, Svasti Haricharan, Lianne Q Chau, Meher Beigi Masihi, Jessica M Rusert, Paula S Norris, Florent Carrette, Megan M Romero, A Sorana Morrissy, Patryk Skowron, Florence M G Cavalli, Hamza Farooq, Vijay Ramsawami, Steven J M Jones, Richard A Moore, Andrew J Mungall, Yussanne Ma, Nina Thiessen, Yisu Li, Alaide Morcavallo, Lin Qi, Mari Kogiso, Yuchen Du, Patricia Baxter, Jacob J Henderson, John R Crawford, Michael L Levy, James M Olson, Yoon-Jae Cho, Aniruddha J Deshpande, Xiao-Nan Li, Louis Chesler, Marco A Marra, Harald Wajant, Oren J Becher, Linda M Bradley, Carl F Ware, Michael D Taylor, Robert J Wechsler-Reya
Tumor necrosis factor overcomes immune evasion in p53-mutant medulloblastoma. Nature neuroscience 23 (7) (2020)
Erin Pleasance, Emma Titmuss, Laura Williamson, Harwood Kwan, Luka Culibrk, Eric Y Zhao, Katherine Dixon, Kevin Fan, Reanne Bowlby, Martin R Jones, Yaoqing Shen, Jasleen K Grewal, Jahanshah Ashkani, Kathleen Wee, Cameron J Grisdale, My Linh Thibodeau, Zoltan Bozoky, Hillary Pearson, Elisa Majounie, Tariq Vira, Reva Shenwai, Karen L Mungall, Eric Chuah, Anna Davies, Mya Warren, Caralyn Reisle, Melika Bonakdar, Gregory A Taylor, Veronika Csizmok, Simon K Chan, Zusheng Zong, Steve Bilobram, Amir Muhammadzadeh, Darryl D'Souza, Richard D Corbett, Daniel MacMillan, Marcus Carreira, Caleb Choo, Dustin Bleile, Sara Sadeghi, Wei Zhang, Tina Wong, Dean Cheng, Scott D Brown, Robert A Holt, Richard A Moore, Andrew J Mungall, Yongjun Zhao, Jessica Nelson, Alexandra Fok, Yussanne Ma, Michael K C Lee, Jean-Michel Lavoie, Shehara Mendis, Joanna M Karasinska, Balvir Deol, Ana Fisic, David F Schaeffer, Stephen Yip, Kasmintan Schrader, Deirdre Weymann, Deirdre Weymann, Stephen Chia, Karen Gelmon, Anna Tinker, Sophie Sun, Howard Lim, Daniel J Renouf, Janessa Laskin, Steven J M Jones, Marco A Marra
Pan-cancer analysis of advanced patient tumors reveals interactions between therapy and genomic landscapes. Nature cancer 1 (4) (2020)
Jake Lever, Martin R Jones, Arpad M Danos, Kilannin Krysiak, Melika Bonakdar, Jasleen K Grewal, Luka Culibrk, Obi L Griffith, Malachi Griffith, Steven J M Jones
Text-mining clinically relevant cancer biomarkers for curation into the CIViC database. Genome medicine 11 (1) (2019)
Jake Lever, Eric Y Zhao, Jasleen Grewal, Martin R Jones, Steven J M Jones
CancerMine: a literature-mined resource for drivers, oncogenes and tumor suppressors in cancer. Nature methods 16 (6) (2019)
Anthony D Saleh, Hui Cheng, Scott E Martin, Han Si, Pinar Ormanoglu, Sophie Carlson, Paul E Clavijo, Xinping Yang, Rita Das, Shaleeka Cornelius, Jamie Couper, Douglas B Chepeha, Ludmila V Danilova, Thomas M Harris, Michael B Prystowsky, Geoffrey J Childs, Richard V Smith, A Gordon Robertson, Steven J M Jones, Andrew D Cherniak, Sang S Kim, Antonina Rait, Kathleen F Pirollo, Esther H Chang, Zhong Chen, Carter Van Waes
Integrated Genomic and Functional microRNA Analysis Identifies miR-30-5p as a Tumor Suppressor and Potential Therapeutic Nanomedicine in Head and Neck Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research 25 (9) (2019)
Nawar Malhis, Steven J M Jones, Jörg Gsponer
Improved measures for evolutionary conservation that exploit taxonomy distances. Nature communications 10 (1) (2019)
Joanna M Karasinska, James T Topham, Steve E Kalloger, Gun Ho Jang, Robert E Denroche, Luka Culibrk, Laura M Williamson, Hui-Li Wong, Michael Kuan-Ching Lee, Grainne M O'Kane, Richard A Moore, Andrew J Mungall, Malcolm J Moore, Cassia Warren, Andrew Metcalfe, Faiyaz Notta, Jennifer J Knox, Steven Gallinger, Janessa Laskin, Marco A Marra, Steven J M Jones, Daniel J Renouf, David F Schaeffer
Altered Gene Expression along the Glycolysis-Cholesterol Synthesis Axis Is Associated with Outcome in Pancreatic Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research 26 (1) (2019)
Harwood H Kwan, Luka Culibrk, Gregory A Taylor, Sreeja Leelakumari, Ryan Tan, Shaun D Jackman, Kane Tse, Tina MacLeod, Dean Cheng, Eric Chuah, Heather Kirk, Pawan Pandoh, Rebecca Carlsen, Yongjun Zhao, Andrew J Mungall, Richard Moore, Inanc Birol, Marco A Marra, David A S Rosen, Martin Haulena, Steven J M Jones
The Genome of the Steller Sea Lion (Eumetopias jubatus). Genes 10 (7) (2019)
Steven J M Jones, Laura M Williamson, James T Topham, Michael Kuan-Ching Lee, Angela Goytain, Julie Ho, Robert E Denroche, GunHo Jang, Erin Pleasance, Yaoquing Shen, Joanna M Karasinska, John P McGhie, Sharlene Gill, Howard J Lim, Malcolm J Moore, Hui-Li Wong, Tony Ng, Stephen Yip, Wei Zhang, Sara Sadeghi, Caralyn Reisle, Andrew J Mungall, Richard A Moore, Yussanne Ma, Jennifer J Knox, Steven Gallinger, Janessa Laskin, Marco A Marra, David F Schaeffer, Daniel J Renouf
NRG1 Gene Fusions Are Recurrent, Clinically Actionable Gene Rearrangements in KRAS Wild-Type Pancreatic Ductal Adenocarcinoma. Clinical cancer research : an official journal of the American Association for Cancer Research 25 (15) (2019)
Michael J Roach, Daniel L Johnson, Joerg Bohlmann, Hennie J J van Vuuren, Steven J M Jones, Isak S Pretorius, Simon A Schmidt, Anthony R Borneman
Population sequencing reveals clonal diversity and ancestral inbreeding in the grapevine cultivar Chardonnay. PLoS genetics 14 (11) (2018)
Gregory A Taylor, Heather Kirk, Lauren Coombe, Shaun D Jackman, Justin Chu, Kane Tse, Dean Cheng, Eric Chuah, Pawan Pandoh, Rebecca Carlsen, Yongjun Zhao, Andrew J Mungall, Richard Moore, Inanc Birol, Maria Franke, Marco A Marra, Christopher Dutton, Steven J M Jones
The Genome of the North American Brown Bear or Grizzly: Ursus arctos ssp. horribilis. Genes 9 (12) (2018)
Steven J M Jones, Gregory A Taylor, Simon Chan, René L Warren, S Austin Hammond, Steven Bilobram, Gideon Mordecai, Curtis A Suttle, Kristina M Miller, Angela Schulze, Amy M Chan, Samantha J Jones, Kane Tse, Irene Li, Dorothy Cheung, Karen L Mungall, Caleb Choo, Adrian Ally, Noreen Dhalla, Angela K Y Tam, Armelle Troussard, Heather Kirk, Pawan Pandoh, Daniel Paulino, Robin J N Coope, Andrew J Mungall, Richard Moore, Yongjun Zhao, Inanc Birol, Yussanne Ma, Marco Marra, Martin Haulena
The Genome of the Beluga Whale (Delphinapterus leucas). Genes 8 (12) (2017)
Samantha J Jones, Martin Haulena, Gregory A Taylor, Simon Chan, Steven Bilobram, René L Warren, S Austin Hammond, Karen L Mungall, Caleb Choo, Heather Kirk, Pawan Pandoh, Adrian Ally, Noreen Dhalla, Angela K Y Tam, Armelle Troussard, Daniel Paulino, Robin J N Coope, Andrew J Mungall, Richard Moore, Yongjun Zhao, Inanc Birol, Yussanne Ma, Marco Marra, Steven J M Jones
The Genome of the Northern Sea Otter (Enhydra lutris kenyoni). Genes 8 (12) (2017)

Steven J M Jones.css-eqlu8i{font-size:small;padding-left:4px;} (Steven J Jones, S J M Jones, Steven Jones, Martin R Jones)

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Steven J M Jones (Steven J Jones, S J M Jones, Steven Jones, Martin R Jones)