In silico identification of SARS-CoV-2 spike (S) protein-ACE2 complex inhibitors from eight Tecoma species and cultivars analyzed by LC-MS.
Seham S El HawaryAmira R KhattabHanan S MarzoukAmira S El SenousyMariam G A AlexOmar M AlyMohamed TelebUsama Ramadan AbdelmohsenPublished in: RSC advances (2020)
Coronavirus (CoV) is a positive RNA genome virus causing a global panic nowadays. Tecoma is a medicinally-valuable genus in the Bignoniaceae family, with some of its species exhibiting anti-HIV activity. This encouraged us to conduct an in silico exploration of some phytocompounds in Tecoma species cultivated in Egypt, namely Tecoma capensis and its four varieties i.e. yellow, harmony, pink and red, T. grandiflora Loisel., T. radicans L., and one hybrid i.e. Tecoma × smithii W. Watson. LC/MS-based metabolite profiling of the studied Tecoma plants resulted in the dereplication of 12 compounds (1-12) belonging to different phytochemical classes viz. alkaloids, iridoids, flavonoids and fatty acid esters. The in silico inhibitory action of these compounds against SARS-CoV-2 spike protein C-terminal domain in complex with human ACE2 was assessed via molecular docking. Succinic acid decyl-3-oxobut-2-yl ester (10), a fatty acid ester, possessed the best binding affinity (-6.77 kcal mol -1 ), as compared to hesperidin (13) (-7.10 kcal mol -1 ).
Keyphrases
- molecular docking
- sars cov
- fatty acid
- respiratory syndrome coronavirus
- molecular dynamics simulations
- endothelial cells
- binding protein
- angiotensin converting enzyme
- antiretroviral therapy
- angiotensin ii
- protein protein
- hepatitis c virus
- hiv infected
- human immunodeficiency virus
- amino acid
- genetic diversity
- hiv aids
- dna methylation
- single cell
- small molecule
- mass spectrometry
- dna binding
- nucleic acid
- capillary electrophoresis