Unlocking the transcriptomic potential of formalin-fixed paraffin embedded clinical tissues: comparison of gene expression profiling approaches.

Arran K TurnbullCigdem SelliCarlos Martinez-PerezAnu FernandoLorna RenshawJane KeysJonine D FigueroaXiaping HeMaki TaniokaAlison F MunroLee MurphyAngie FawkesRichard ClarkAudrey CouttsCharles M PerouLisa A CareyJ Michael DixonAndrew H Sims

Published in: BMC bioinformatics (2020)

Overall, we illustrate that technology selection is a balance between required resolution, sample quality, availability and cost.

Keyphrases

genome wide
genome wide identification
gene expression
copy number
dna methylation
rna seq
quality improvement
transcription factor
risk assessment