Extracting high-quality RNA from formaldehyde-fixed naturally aged neuromusculoskeletal tissues.
Seth D ThompsonRajeswari PichikaRichard L LieberMitra LavasaniPublished in: BioTechniques (2024)
Modern approaches to discovering molecular mechanisms and validating treatments for age-related neuromusculoskeletal dysfunction typically rely on high-throughput transcriptome analysis. Previously harvested and fixed tissues offer an incredible reservoir of untapped molecular information. However, obtaining RNA from such formaldehyde-fixed neuromusculoskeletal tissues, especially fibrotic aged tissues, is technically challenging and often results in RNA degradation, chemical modification and yield reduction, prohibiting further analysis. Therefore, we developed a protocol to extract high-quality RNA from formaldehyde-fixed brain, cartilage, muscle and peripheral nerve isolated from naturally aged mice. Isolated RNA produced reliable gene expression data comparable to fresh and flash-frozen tissues and was sensitive enough to detect age-related changes, making our protocol valuable to researchers in the field of aging.
Keyphrases
- gene expression
- high throughput
- peripheral nerve
- randomized controlled trial
- nucleic acid
- dna methylation
- oxidative stress
- room temperature
- type diabetes
- multiple sclerosis
- systemic sclerosis
- adipose tissue
- idiopathic pulmonary fibrosis
- resting state
- extracellular matrix
- deep learning
- single molecule
- artificial intelligence
- functional connectivity