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Dating ancient splits in phylogenetic trees, with application to the human-Neanderthal split.

Keren Levinstein HallakSaharon Rosset
Published in: BMC genomic data (2024)
Our methods utilize the transition statistics from the entire known human mtDNA phylogenetic tree (Phylotree), eliminating the requirement to reconstruct a tree encompassing the specific sequences of interest. Moreover, they demonstrate notable improvement in both running speed and accuracy compared to BEAST2, particularly for earlier TMRCAs like the human-Chimpanzee split. Our results date the human - Neanderthal TMRCA to be [Formula: see text] years ago, considerably later than values cited in other recent studies.
Keyphrases
  • endothelial cells
  • induced pluripotent stem cells
  • pluripotent stem cells
  • gene expression
  • dna methylation
  • mitochondrial dna
  • smoking cessation
  • genome wide