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Kohdista: an efficient method to index and query possible Rmap alignments.

Martin D MuggliSimon J PuglisiChristina Boucher
Published in: Algorithms for molecular biology : AMB (2019)
we demonstrate Kohdista is the only method that is capable of finding a significant number of high quality pairwise Rmap alignments for large eukaryote organisms in reasonable time.
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