Christina Boucher

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 21

Top Topics

Antimicrobial Resistance

Top Venues

International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium)

bioRxiv : the preprint server for biology

Bioinformatics (Oxford, England)

Journal of computational biology : a journal of computational molecular cell biology

This page only lists publications with an associated author ORCID identifier.

Publications

Justin Kim, Rahul Varki, Marco Oliva, Christina Boucher
Re 2 Pair: Increasing the Scalability of RePair by Decreasing Memory Usage. bioRxiv : the preprint server for biology (2024)
Mohammadali Serajian, Simone Marini, Jarno N Alanko, Noelle Robertson Noyes, Mattia A Prosperi, Christina Boucher
Scalable de novo classification of antibiotic resistance of Mycobacterium tuberculosis. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Mohammadali Serajian, Simone Marini, Jarno N Alanko, Noelle Robertson Noyes, Mattia A Prosperi, Christina Boucher
Scalable de novo classification of antibiotic resistance of Mycobacterium tuberculosis. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Justin Kim, Rahul Varki, Marco Oliva, Christina Boucher
Re 2 Pair: Increasing the Scalability of RePair by Decreasing Memory Usage. bioRxiv : the preprint server for biology (2024)
Aaron Hong, Rebecca G Cheek, Suhashi Nihara De Silva, Kingshuk Mukherjee, Isha Yooseph, Marco Oliva, Mark Heim, W Chris Funk, David Tallmon, Christina Boucher
ONeSAMP 3.0: Estimation of Effective Population Size via SNP Data from One Population. G3 (Bethesda, Md.) (2024)
Justin Kim, Rahul Varki, Marco Oliva, Christina Boucher
Re 2 Pair: Increasing the Scalability of RePair by Decreasing Memory Usage. bioRxiv : the preprint server for biology (2024)
Mohammadali Serajian, Simone Marini, Jarno N Alanko, Noelle Robertson Noyes, Mattia A Prosperi, Christina Boucher
Scalable de novo classification of antibiotic resistance of Mycobacterium tuberculosis. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Paola Bonizzoni, Christina Boucher, Davide Cozzi, Travis Gagie, Dominik Köppl, Massimiliano Rossi
Data Structures for SMEM-Finding in the PBWT. International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium) 14240 (2023)
Paola Bonizzoni, Christina Boucher, Davide Cozzi, Travis Gagie, Dominik Köppl, Massimiliano Rossi
Data Structures for SMEM-Finding in the PBWT. International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium) 14240 (2023)
Paola Bonizzoni, Christina Boucher, Davide Cozzi, Travis Gagie, Dominik Köppl, Massimiliano Rossi
Data Structures for SMEM-Finding in the PBWT. International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium) 14240 (2023)
Massimiliano Rossi, Marco Oliva, Paola Bonizzoni, Ben Langmead, Travis Gagie, Christina Boucher
Finding Maximal Exact Matches Using the r-Index. Journal of computational biology : a journal of computational molecular cell biology 29 (2) (2022)
Massimiliano Rossi, Marco Oliva, Ben Langmead, Travis Gagie, Christina Boucher
MONI: A Pangenomic Index for Finding Maximal Exact Matches. Journal of computational biology : a journal of computational molecular cell biology 29 (2) (2022)
Nathalie Bonin, Enrique Doster, Hannah Worley, Lee J Pinnell, Jonathan E Bravo, Peter Ferm, Simone Marini, Mattia A Prosperi, Noelle Noyes, Paul S Morley, Christina Boucher
MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing. Nucleic acids research (2022)
Simone Marini, Marco Oliva, Ilya B Slizovskiy, Rishabh A Das, Noelle Robertson Noyes, Tamer Kahveci, Christina Boucher, Mattia A Prosperi
AMR-meta: a k-mer and metafeature approach to classify antimicrobial resistance from high-throughput short-read metagenomics data. GigaScience 11 (2022)
Christina Boucher, Davide Cenzato, Zsuzsanna Lipták, Massimiliano Rossi, Marinella Sciortino
r-indexing the eBWT. International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium) 12944 (2021)
Christina Boucher, Davide Cenzato, Zsuzsanna Lipták, Massimiliano Rossi, Marinella Sciortino
r-indexing the eBWT. International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium) 12944 (2021)
Christina Boucher, Davide Cenzato, Zsuzsanna Lipták, Massimiliano Rossi, Marinella Sciortino
Computing the original eBWT faster, simpler, and with less memory. International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium) 12944 (2021)
Christina Boucher, Davide Cenzato, Zsuzsanna Lipták, Massimiliano Rossi, Marinella Sciortino
Computing the original eBWT faster, simpler, and with less memory. International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium) 12944 (2021)
Christina Boucher, Davide Cenzato, Zsuzsanna Lipták, Massimiliano Rossi, Marinella Sciortino
r-indexing the eBWT. International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium) 12944 (2021)
Martin D Muggli, Simon J Puglisi, Christina Boucher
Kohdista: an efficient method to index and query possible Rmap alignments. Algorithms for molecular biology : AMB 14 (2019)
Steven M Lakin, Alan Kuhnle, Bahar Alipanahi, Noelle Robertson Noyes, Chris Dean, Martin Muggli, Rob Raymond, Zaid Abdo, Mattia A Prosperi, Keith E Belk, Paul S Morley, Christina Boucher
Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences. Communications biology 2 (2019)