The Epithelial-Stromal Microenvironment in Early Colonic Neoplasia.
Takayasu IdetaBoyang LiChristopher FlynnYuichi IgarashiGeoffrey M LowmanTim LooneyThomas J DeversJohn BirkFaripour ForouharCharles GiardinaDaniel W RosenbergPublished in: Molecular cancer research : MCR (2021)
Stromal cells play a central role in promoting the progression of colorectal cancer. Here, we analyze molecular changes within the epithelial and stromal compartments of dysplastic aberrant crypt foci (ACF) formed in the ascending colon, where rapidly developing interval cancers occur. We found strong activation of numerous neutrophil/monocyte chemokines, consistent with localized inflammation. The data also indicated a decrease in interferon signaling and cell-based immunity. The immune checkpoint and T-cell exhaustion gene PDCD1 was one of the most significantly upregulated genes, which was accompanied by a decrease in cytotoxic T-cell effector gene expression. In addition, CDKN2A expression was strongly upregulated in the stroma and downregulated in the epithelium, consistent with diverse changes in senescence-associated signaling on the two tissue compartments. IMPLICATIONS: Decreased CD8 T-cell infiltration within proximal colon ACF occurs within the context of a robust inflammatory response and potential stromal cell senescence, thus providing new insight into potential promotional drivers for tumors in the proximal colon.
Keyphrases
- gene expression
- inflammatory response
- bone marrow
- dendritic cells
- single cell
- endothelial cells
- dna damage
- genome wide
- cell therapy
- poor prognosis
- stem cells
- dna methylation
- oxidative stress
- human health
- electronic health record
- lipopolysaccharide induced
- stress induced
- genome wide identification
- copy number
- pulmonary artery
- young adults
- big data
- binding protein
- peripheral blood
- climate change
- data analysis
- pulmonary arterial hypertension
- bioinformatics analysis