Establishment of a Rapid Detection Method for Yeast-like Symbionts in Brown Planthopper Based on Droplet Digital PCR Technology.
Jun ZhangChengling LaiXuping ShentuPeiying HaoKun PangXiaoping YuPublished in: International journal of molecular sciences (2023)
The brown planthopper Nilaparvata lugens (Stål) (BPH) is a typical monophagous sucking rice pest. Over the course of their evolution, BPH and its symbionts have established an interdependent and mutually beneficial relationship, with the symbionts being important to the growth, development, reproduction, and variation in virulence of BPH. Yeast-like symbionts (YLS), harbored in the abdomen fat body cells of BPH, are vital to the growth and reproduction of the host. In recent research, the symbionts in BPH have mainly been detected using blood cell counting, PCR, real-time quantitative PCR, and other methods. These methods are vulnerable to external interference, cumbersome, time consuming and laborious. Droplet digital PCR (ddPCR) does not need a standard curve, can achieve absolute quantification, does not rely on Cq values, and is more useful for analyzing copy number variation, gene mutations, and relative gene expression. A rapid detection method for the YLS of BPH based on ddPCR was established and optimized in this study. The results showed that the method's limits of detection for the two species of YLS ( Ascomycetes symbionts and Pichia guilliermondii ) were 1.3 copies/μL and 1.2 copies/μL, respectively. The coefficient of variation of the sample repetition was less than 5%; therefore, the ddPCR method established in this study had good sensitivity, specificity, and repeatability. It can be used to detect the YLS of BPH rapidly and accurately.
Keyphrases
- benign prostatic hyperplasia
- lower urinary tract symptoms
- real time pcr
- loop mediated isothermal amplification
- copy number
- gene expression
- single cell
- mitochondrial dna
- dna methylation
- high throughput
- label free
- escherichia coli
- genome wide
- adipose tissue
- magnetic resonance imaging
- stem cells
- pseudomonas aeruginosa
- magnetic resonance
- computed tomography
- mass spectrometry
- cell therapy
- signaling pathway
- fatty acid
- cell death
- quantum dots
- bone marrow
- genetic diversity