Login / Signup

Reliable transformation system for Microbotryum lychnidis-dioicae informed by genome and transcriptome project.

Su San TohDavid S TrevesMichelle T BaratiMichael H Perlin
Published in: Archives of microbiology (2016)
Microbotryum lychnidis-dioicae is a member of a species complex infecting host plants in the Caryophyllaceae. It is used as a model system in many areas of research, but attempts to make this organism tractable for reverse genetic approaches have not been fruitful. Here, we exploited the recently obtained genome sequence and transcriptome analysis to inform our design of constructs for use in Agrobacterium-mediated transformation techniques currently available for other fungi. Reproducible transformation was demonstrated at the genomic, transcriptional and functional levels. Moreover, these initial proof-of-principle experiments provide evidence that supports the findings from initial global transcriptome analysis regarding expression from the respective promoters under different growth conditions of the fungus. The technique thus provides for the first time the ability to stably introduce transgenes and over-express target M. lychnidis-dioicae genes.
Keyphrases
  • genome wide
  • copy number
  • dna methylation
  • gene expression
  • poor prognosis
  • single cell
  • rna seq
  • transcription factor
  • binding protein
  • amino acid
  • oxidative stress
  • long non coding rna
  • heat shock
  • bioinformatics analysis