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Changes in active-site geometry on X-ray photoreduction of a lytic polysaccharide monooxygenase active-site copper and saccharide binding.

Tobias TandrupSebastian Jannick MuderspachSanchari BanerjeeGianluca SantoniJohan Ørskov IpsenCristina Hernández-RollánMorten H H NørholmKatja Salomon JohansenFlora MeilleurLeila Lo Leggio
Published in: IUCrJ (2022)
The recently discovered lytic polysaccharide monooxygenases (LPMOs) are Cu-containing enzymes capable of degrading polysaccharide substrates oxidatively. The generally accepted first step in the LPMO reaction is the reduction of the active-site metal ion from Cu 2+ to Cu + . Here we have used a systematic diffraction data collection method to monitor structural changes in two AA9 LPMOs, one from Lentinus similis ( Ls AA9_A) and one from Thermoascus auranti-acus ( Ta AA9_A), as the active-site Cu is photoreduced in the X-ray beam. For Ls AA9_A, the protein produced in two different recombinant systems was crystallized to probe the effect of post-translational modifications and different crystallization conditions on the active site and metal photoreduction. We can recommend that crystallographic studies of AA9 LPMOs wishing to address the Cu 2+ form use a total X-ray dose below 3 × 10 4  Gy, while the Cu + form can be attained using 1 × 10 6  Gy. In all cases, we observe the transition from a hexa-coordinated Cu site with two solvent-facing ligands to a T-shaped geometry with no exogenous ligands, and a clear increase of the θ 2 parameter and a decrease of the θ 3 parameter by averages of 9.2° and 8.4°, respectively, but also a slight increase in θ T . Thus, the θ 2 and θ 3 parameters are helpful diagnostics for the oxidation state of the metal in a His-brace protein. On binding of cello-oligosaccharides to Ls AA9_A, regardless of the production source, the θ T parameter increases, making the Cu site less planar, while the active-site Tyr-Cu distance decreases reproducibly for the Cu 2+ form. Thus, the θ T increase found on copper reduction may bring Ls AA9_A closer to an oligosaccharide-bound state and contribute to the observed higher affinity of reduced Ls AA9_A for cellulosic substrates.
Keyphrases
  • aqueous solution
  • metal organic framework
  • high resolution
  • machine learning
  • small molecule
  • magnetic resonance
  • electron microscopy
  • transcription factor
  • quantum dots
  • binding protein
  • electron transfer