Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.
Annah B WyssTamar SoferMi Kyeong LeeNatalie TerzikhanJennifer N NguyenLies LahousseJeanne C LatourelleAlbert Vernon SmithTraci M BartzMary F FeitosaWei GaoTarunveer S AhluwaliaWenbo TangChristopher OldmeadowQing DuanKim de JongMary K WojczynskiXin-Qun WangRaymond NoordamFernando Pires HartwigVictoria E JacksonTianyuan WangMa'en ObeidatBrian D HobbsTianxiao HuanHongsheng GuiMargaret M ParkerDonglei HuLauren S MogilGleb KichaevJianping JinMariaelisa GraffTamara B HarrisRavi KalhanSusan R HeckbertLavinia PaternosterKristin M BurkartYongmei LiuElizabeth G HollidayJames G WilsonJudith M VonkJason L SandersR Graham BarrRenée de MutsertAna Maria Baptista MenezesHieab H H AdamsMaarten van den BergeRoby JoehanesAlbert M LevinJennifer R ElhawaryLenore J LaunerAlanna C MorrisonColleen M SitlaniJuan C CeledónStephen B KritchevskyRodney J ScottKaare ChristensenJerome I RotterTobias N BontenFernando César WehrmeisterYohan BosseShujie XiaoSam S OhNora FranceschiniJennifer A BrodyRobert C KaplanKurt LohmanMark McEvoyMichael A ProvinceFrits R RosendaalKent D TaylorDavid C NickleL Keoki WilliamsEsteban G BurchardHeather E WheelerDon D SinVilmundur GudnasonKari E NorthMyriam FornageBruce M PsatyRichard H MyersGeorge O'ConnorTorben HansenCathy C LauriePatricia A CassanoJoohon SungWoo Jin KimJohn Richard AttiaLeslie LangeH Marike BoezenBharat ThygarajanStephen S RichDennis O Mook-KanamoriBernardo Lessa HortaAndré G UitterlindenHae Kyung ImMichael H ChoGuy G BrusselleSina A GharibJosée DupuisAni ManichaikulStephanie J LondonPublished in: Nature communications (2018)
Nearly 100 loci have been identified for pulmonary function, almost exclusively in studies of European ancestry populations. We extend previous research by meta-analyzing genome-wide association studies of 1000 Genomes imputed variants in relation to pulmonary function in a multiethnic population of 90,715 individuals of European (N = 60,552), African (N = 8429), Asian (N = 9959), and Hispanic/Latino (N = 11,775) ethnicities. We identify over 50 additional loci at genome-wide significance in ancestry-specific or multiethnic meta-analyses. Using recent fine-mapping methods incorporating functional annotation, gene expression, and differences in linkage disequilibrium between ethnicities, we further shed light on potential causal variants and genes at known and newly identified loci. Several of the novel genes encode proteins with predicted or established drug targets, including KCNK2 and CDK12. Our study highlights the utility of multiethnic and integrative genomics approaches to extend existing knowledge of the genetics of lung function and clinical relevance of implicated loci.
Keyphrases
- genome wide
- dna methylation
- copy number
- genome wide association study
- genome wide association
- meta analyses
- systematic review
- gene expression
- lung function
- air pollution
- chronic obstructive pulmonary disease
- healthcare
- randomized controlled trial
- high resolution
- cell cycle
- emergency department
- single cell
- mass spectrometry
- human immunodeficiency virus
- hepatitis c virus
- transcription factor
- high density
- drug induced
- men who have sex with men