Pulmonary Effects of Traumatic Brain Injury in Mice: A Gene Set Enrichment Analysis.
Wei-Hung ChanShih-Ming HuangYi-Lin ChiuPublished in: International journal of molecular sciences (2024)
Acute lung injury occurs in 20-25% of cases following traumatic brain injury (TBI). We investigated changes in lung transcriptome expression post-TBI using animal models and bioinformatics. Employing unilateral controlled cortical impact for TBI, we conducted microarray analysis after lung acquisition, followed by gene set enrichment analysis of differentially expressed genes. Our findings indicate significant upregulation of inflammation-related genes and downregulation of nervous system genes. There was enhanced infiltration of adaptive immune cells, evidenced by positive enrichment in Lung-Th1, CD4, and CD8 T cells. Analysis using the Tabula Sapiens database revealed enrichment in lung-adventitial cells, pericytes, myofibroblasts, and fibroblasts, indicating potential effects on lung vasculature and fibrosis. Gene set enrichment analysis linked TBI to lung diseases, notably idiopathic pulmonary hypertension. A Venn diagram overlap analysis identified a common set of 20 genes, with FOSL2 showing the most significant fold change. Additionally, we observed a significant increase in ADRA1A → IL6 production post-TBI using the L1000 library. Our study highlights the impact of brain trauma on lung injury, revealing crucial gene expression changes related to immune cell infiltration, cytokine production, and potential alterations in lung vasculature and fibrosis, along with a specific spectrum of disease influence.
Keyphrases
- traumatic brain injury
- genome wide
- gene expression
- pulmonary hypertension
- severe traumatic brain injury
- genome wide identification
- poor prognosis
- cell proliferation
- copy number
- single cell
- emergency department
- risk assessment
- induced apoptosis
- brain injury
- rna seq
- cell cycle arrest
- climate change
- high resolution
- pi k akt
- blood brain barrier
- cerebral ischemia
- endoplasmic reticulum stress