PhyloHerb: A high-throughput phylogenomic pipeline for processing genome skimming data.

Liming Cai Hongrui Zhang Charles C Davis

Published in: Applications in plant sciences (2022)

We demonstrate that PhyloHerb can accurately identify genes using a published data set from Clusiaceae. We also show via simulations that our approach is effective for highly fragmented assemblies from herbarium specimens and is scalable to thousands of species.

Keyphrases

high throughput
electronic health record
genome wide
big data
molecular dynamics
single cell
randomized controlled trial
gene expression
systematic review
transcription factor
artificial intelligence
bioinformatics analysis
genetic diversity