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Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods.

Sebastián DuchêneDavid A DucheneJemma L GeogheganZoe A DysonJane HawkeyKathryn E Holt
Published in: BMC evolutionary biology (2018)
Hybrid approaches can produce reliable inferences of evolutionary timescales and phylodynamic parameters in a fraction of the time required for fully Bayesian analyses. As such, they are a valuable alternative in outbreak studies involving a large number of isolates.
Keyphrases
  • electronic health record
  • genome wide
  • copy number
  • case control
  • gene expression
  • genetic diversity
  • machine learning
  • dna methylation