Sebastián Duchêne (Sebastian Duchêne, Sebastián Duchene, Sebastian Duchene)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 31

Top Venues

Communications biology

PLoS pathogens

Genome biology and evolution

Molecular biology and evolution

University of Melbourne

University of Sydney (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Melbourne Feb 10 2019

Australia

Australian Research Council Fellow :: Microbiology and Immunology

University of Melbourne

Australia

McKenzie Fellow :: Dept of Biochemistry and Molecular Biology

University of Sydney

Australia

Postdoc :: School of Medicine and School of Biological Sciences

Education History

University of Sydney

Australia

PHD :: School of Biological Sciences

Universidad de los Andes

Colombia

MSC :: Biological Sciences

Universidad de los Andes

Colombia

BSC :: Biological Sciences

Publications

David A Duchêne, Sebastián Duchêne, Josefin Stiller, Rasmus Heller, Simon Y W Ho
ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data. Genome biology and evolution 16 (4) (2024)
David A Duchêne, Sebastián Duchêne, Josefin Stiller, Rasmus Heller, Simon Y W Ho
ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data. Genome biology and evolution 16 (4) (2024)
David A Duchêne, Sebastián Duchêne, Josefin Stiller, Rasmus Heller, Simon Y W Ho
ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data. Genome biology and evolution 16 (4) (2024)
David A Duchêne, Sebastián Duchêne, Josefin Stiller, Rasmus Heller, Simon Y W Ho
ClockstaRX: Testing molecular clock hypotheses with genomic data. Genome biology and evolution (2024)
Mona L Taouk, George Taiaroa, Sebastián Duchêne, Soo Jen Low, Charlie K Higgs, Darren Y J Lee, Shivani Pasricha, Nasra Higgins, Danielle N Ingle, Benjamin Peter Howden, Marcus Y Chen, Christopher K Fairley, Eric Pui Fung Chow, Deborah Ann Williamson
Longitudinal genomic analysis of Neisseria gonorrhoeae transmission dynamics in Australia. Nature communications 15 (1) (2024)
Sebastian Duchene, Andrew Rambaut, Sebastián Duchêne, Wytamma Wirth
Clockor2: Inferring global and local strict molecular clocks using root-to-tip regression. Systematic biology (2024)
John H Tay, Guy Baele, Sebastián Duchêne
Detecting episodic evolution through Bayesian inference of molecular clock models. Molecular biology and evolution (2023)
Katherine Eaton, Leo Featherstone, Sebastián Duchêne, Ann G Carmichael, Nükhet Varlık, G Brian Golding, Edward C Holmes, Hendrik N Poinar
Plagued by a cryptic clock: insight and issues from the global phylogeny of Yersinia pestis. Communications biology 6 (1) (2023)
Katherine Eaton, Leo Featherstone, Sebastián Duchêne, Ann G Carmichael, Nükhet Varlık, G Brian Golding, Edward C Holmes, Hendrik N Poinar
Plagued by a cryptic clock: insight and issues from the global phylogeny of Yersinia pestis. Communications biology 6 (1) (2023)
Katherine Eaton, Leo Featherstone, Sebastián Duchêne, Ann G Carmichael, Nükhet Varlık, G Brian Golding, Edward C Holmes, Hendrik N Poinar
Plagued by a cryptic clock: insight and issues from the global phylogeny of Yersinia pestis. Communications biology 6 (1) (2023)
Sebastian Duchene, Sebastián Duchêne, Timothy G Vaughan
Decoding the fundamental drivers of phylodynamic inference. Molecular biology and evolution (2023)
Katherine Eaton, Leo Featherstone, Sebastián Duchêne, Ann G Carmichael, Nükhet Varlık, G Brian Golding, Edward C Holmes, Hendrik N Poinar
Plagued by a cryptic clock: insight and issues from the global phylogeny of Yersinia pestis. Communications biology 6 (1) (2023)
Katherine Eaton, Leo Featherstone, Sebastián Duchêne, Ann G Carmichael, Nükhet Varlık, G Brian Golding, Edward C Holmes, Hendrik N Poinar
Plagued by a cryptic clock: insight and issues from the global phylogeny of Yersinia pestis. Communications biology 6 (1) (2023)
John H Tay, Ashleigh F Porter, Wytamma Wirth, Sebastián Duchêne
The Emergence of SARS-CoV-2 Variants of Concern Is Driven by Acceleration of the Substitution Rate. Molecular biology and evolution 39 (2) (2022)
Ashleigh F Porter, Norelle Sherry, Patiyan Andersson, Sandra A Johnson, Sebastián Duchêne, Benjamin Peter Howden
New rules for genomics-informed COVID-19 responses-Lessons learned from the first waves of the Omicron variant in Australia. PLoS genetics 18 (10) (2022)
Eike Steinig, Izzard Aglua, Sebastián Duchêne, Michael T Meehan, Mition Yoannes, Cadhla Firth, Jan Jaworski, Jimmy Drekore, Bohu Urakoko, Harry Poka, Clive Wurr, Eri Ebos, David Nangen, Elke Müller, Peter Mulvey, Charlene R Jackson, Anita Blomfeldt, Hege Vangstein Aamot, Moses Laman, Laurens Manning, Megan Earls, David C Coleman, Andrew Greenhill, Rebecca Ford, Marc Stegger, Muhammad Ali Syed, Bushra Jamil, Stefan Monecke, Ralf Ehricht, Simon Smith, William Pomat, Paul F Horwood, Steven Y C Tong, Emma S McBryde
Phylodynamic signatures in the emergence of community-associated MRSA. Proceedings of the National Academy of Sciences of the United States of America 119 (45) (2022)
Wytamma Wirth, Simon Mutch, Robert Turnbull, Sebastián Duchêne
Phytest: quality control for phylogenetic analyses. Bioinformatics (Oxford, England) 38 (22) (2022)
Sebastián Duchêne, Leo Featherstone, Birgitte Freiesleben de Blasio, Edward C Holmes, Jon Bohlin, John H-O Pettersson
Assessment of Coronavirus Disease 2019 Intervention Strategies in the Nordic Countries Using Genomic Epidemiology. Open forum infectious diseases 9 (3) (2022)
Wytamma Wirth, Sebastián Duchêne
Real-Time and Remote MCMC Trace Inspection with Beastiary. Molecular biology and evolution 39 (5) (2022)
Franziska Hufsky, Denis Beslic, Dimitri Boeckaerts, Sebastián Duchêne, Enrique González-Tortuero, Andreas J Gruber, Jiarong Guo, Daan Jansen, John Juma, Kunaphas Kongkitimanon, Antoni Luque, Muriel Ritsch, Gabriel Lencioni Lovate, Luca Nishimura, Célia Pas, Esteban Domingo, Emma B Hodcroft, Philippe Lemey, Matthew B Sullivan, Friedemann Weber, Fernando Gonzáles-Candelas, Sarah Krautwurst, Alba Pérez-Cataluña, Walter Randazzo, Gloria Sánchez, Manja Marz
The International Virus Bioinformatics Meeting 2022. Viruses 14 (5) (2022)
George S Long, Jennifer Klunk, Ana T Duggan, Madeline Tapson, Valentina Giuffra, Lavinia Gazzè, Antonio Fornaciari, Sebastián Duchêne, Gino Fornaciari, Olivier Clermont, Erick Denamur, G Brian Golding, Hendrik N Poinar
A 16 th century Escherichia coli draft genome associated with an opportunistic bile infection. Communications biology 5 (1) (2022)
Anthony Lam, Sebastián Duchêne
The Impacts of Low Diversity Sequence Data on Phylodynamic Inference during an Emerging Epidemic. Viruses 13 (1) (2021)
Francesca Di Giallonardo, Sebastián Duchêne, Ilaria Puglia, Valentina Curini, Francesca Profeta, Cesare Camma, Maurilia Marcacci, Paolo Calistri, Edward C Holmes, Alessio Lorusso
Genomic Epidemiology of the First Wave of SARS-CoV-2 in Italy. Viruses 12 (12) (2020)
Kelly L Wyres, Ryan R Wick, Lousie M Judd, Roni Froumine, Alex Tokolyi, Claire L Gorrie, Margaret M C Lam, Sebastián Duchêne, Adam Jenney, Kathryn E Holt
Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae. PLoS genetics 15 (4) (2019)
Fabrizio Menardo, Sebastián Duchêne, Daniela Brites, Sebastien Gagneux
The molecular clock of Mycobacterium tuberculosis. PLoS pathogens 15 (9) (2019)
Remco R Bouckaert, Timothy G Vaughan, Joëlle Barido-Sottani, Sebastián Duchêne, Mathieu Fourment, Alexandra Gavryushkina, Joseph Heled, Graham Jones, Denise Kühnert, Nicola de Maio, Michael Matschiner, Fábio K Mendes, Nicola F Müller, Huw A Ogilvie, Louis du Plessis, Alex Popinga, Andrew Rambaut, David Rasmussen, Igor Siveroni, Marc A Suchard, Chieh-Hsi Wu, Dong Xie, Chi Zhang, Tanja Stadler, Alexei J Drummond
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS computational biology 15 (4) (2019)
Sebastián Duchêne, David A Duchene, Jemma L Geoghegan, Zoe A Dyson, Jane Hawkey, Kathryn E Holt
Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods. BMC evolutionary biology 18 (1) (2018)
Jemma L Geoghegan, Aldo F Saavedra, Sebastián Duchêne, Sheena Sullivan, Ian Barr, Edward C Holmes
Continental synchronicity of human influenza virus epidemics despite climatic variation. PLoS pathogens 14 (1) (2018)
Zoe Patterson Ross, Jennifer Klunk, Gino Fornaciari, Valentina Giuffra, Sebastián Duchêne, Ana T Duggan, Debi Poinar, Mark W Douglas, John-Sebastian Eden, Edward C Holmes, Hendrik N Poinar
The paradox of HBV evolution as revealed from a 16th century mummy. PLoS pathogens 14 (1) (2018)
Jemma L Geoghegan, Sebastián Duchêne, Edward C Holmes
Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families. PLoS pathogens 13 (2) (2017)
Cécile Troupin, Laurent Dacheux, Marion Tanguy, Claude Sabeta, Hervé Blanc, Christiane Bouchier, Marco Vignuzzi, Sebastián Duchêne, Edward C Holmes, Hervé Bourhy
Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts. PLoS pathogens 12 (12) (2016)

Sebastián Duchêne.css-eqlu8i{font-size:small;padding-left:4px;} (Sebastian Duchêne, Sebastián Duchene, Sebastian Duchene)

Publication Activity (10 Years)

Top Topics

Top Venues

Sebastián Duchêne (Sebastian Duchêne, Sebastián Duchene, Sebastian Duchene)