High-content screening image dataset and quantitative image analysis of Salmonella infected human cells.
Antony N AntoniouSimon J PowisJanos Kriston-ViziPublished in: BMC research notes (2019)
High-content screening confocal fluorescence microscopic image set of Salmonella infected HeLa cells is presented. The images were collected with a PerkinElmer Opera LX high-content screening system in seven 96-well plates, 50 field-of-views and DAPI, endoplasmic reticulum tracker channels and Salmonella mCherry protein in each well. Totally 93,300 confocal fluorescence microscopic images were published in this dataset. An ImageJ high-content image analysis workflow was used to extract features. Cells were classified as infected and non-infected, the mean intensity of endoplasmic reticulum tracker under Salmonella bacteria was calculated. Statistical analysis was performed by an R script, quantifying infected and non-infected cells for wild-type and ΔsifA mutant cells. The dataset can be further used by researchers working with big data of endoplasmic reticulum fluorescence microscopic images, Salmonella bacterial infection images and human cancer cells.
Keyphrases
- endoplasmic reticulum
- induced apoptosis
- cell cycle arrest
- deep learning
- escherichia coli
- big data
- optical coherence tomography
- convolutional neural network
- wild type
- listeria monocytogenes
- cell death
- endothelial cells
- endoplasmic reticulum stress
- artificial intelligence
- randomized controlled trial
- single molecule
- signaling pathway
- high resolution
- electronic health record
- quantum dots
- high intensity
- amino acid