The evolution and functional divergence of 10 Apolipoprotein D-like genes in Nilaparvata lugens.
Jia-Bao LuPeng-Peng RenQiao LiFang HeZhong-Tian XuSai-Nan WangJian-Ping ChenJun-Min LiChuan-Xi ZhangPublished in: Insect science (2023)
Apolipoprotein D (ApoD), a member of the lipocalin superfamily of proteins, is involved in lipid transport and stress resistance. Whereas only a single copy of the ApoD gene is found in humans and some other vertebrates, there are typically several ApoD-like genes in insects. To date, there have been relatively few studies that have examined the evolution and functional differentiation of ApoD-like genes in insects, particularly hemi-metabolous insects. In this study, we identified 10 ApoD-like genes (NlApoD1-10) with distinct spatiotemporal expression patterns in Nilaparvata lugens (BPH), which is an important pest of rice. NlApoD1-10 were found to be distributed on 3 chromosomes in a tandem array of NlApoD1/2, NlApoD3-5, and NlApoD7/8, and show sequence and gene structural divergence in the coding regions, indicating that multiple gene duplication events occurred during evolution. Phylogenetic analysis revealed that NlApoD1-10 can be clustered into 5 clades, with NlApoD3-5 and NlApoD7/8 potentially evolving exclusively in the Delphacidae family. Functional screening using an RNA interference approach revealed that only NlApoD2 was essential for BPH development and survival, whereas NlApoD4/5 are highly expressed in testes, and might play roles in reproduction. Moreover, stress response analysis revealed that NlApoD3-5/9, NlApoD3-5, and NlApoD9 were up-regulated after treatment with lipopolysaccharide, H 2 O 2 , and ultraviolet-C, respectively, indicating their potential roles in stress resistance.
Keyphrases
- genome wide identification
- genome wide
- transcription factor
- genome wide analysis
- copy number
- single cell
- dna methylation
- bioinformatics analysis
- benign prostatic hyperplasia
- poor prognosis
- lower urinary tract symptoms
- risk assessment
- gene expression
- inflammatory response
- stress induced
- high throughput
- case control
- long non coding rna
- human health
- climate change
- amino acid