The Methylation of the p53 Targets the Genes MIR-203 , MIR-129-2 , MIR-34A and MIR-34B/C in the Tumor Tissue of Diffuse Large B-Cell Lymphoma.
Elena N VoropaevaTatjana I PospelovaYuriy L OrlovMaria I ChurkinaOlga V BerezinaAnna A GurazhevaTatjana A AgeevaOlga B SereginaVladimir N MaksimovPublished in: Genes (2022)
The regulation of oncogenes by microRNA is a focus of medical research. hsa-miR-203, hsa-mir-129, hsa-miR-34a, hsa-miR-34b and hsa-miR-34c are oncosuppressive microRNAs that mediate the antitumor activity of p53. We seek to evaluate the frequencies, co-occurrence and clinical significance of the methylation of the MIR-203 , MIR-129-2 , MIR-34A and MIR-34B/C genes in the tumor tissue of diffuse large B-cell lymphoma (DLBCL). The methylation was assessed in 73 samples of DLBCL and in 11 samples of lymph nodes of reactive follicular hyperplasia by Methyl-Specific Polymerase Chain Reaction (MS-PCR) and Methylation-Sensitive High-Resolution-Melting (MS-HRM) methods. All four studied genes were not methylated in the tissue of reactive lymphatic nodes. The methylation frequencies of the MIR-129-2 , MIR-203 , MIR-34A and MIR-34B/C genes in lymphoma tissue were 67%, 66%, 27% and 62%, respectively. Co-occurrence of MIR-203 , MIR-129-2 and MIR-34B/C genes methylation, as well as the methylation of MIR-34B/C and MIR-34A pair genes were detected. The MIR-34A gene methylation was associated with increased International Prognostic Index (IPI) ( p = 0.002), whereas the MIR-34B/C ( p = 0.026) and MIR-203 ( p = 0.011) genes' methylation was connected with Ki-67 expression level in tumor tissue at more than 45%. We found an increasing frequency of detection of MIR-34A gene methylation in the group of patients with the Germinal-Center B-cell like (GCB-like) subtype of DLBCL ( p = 0.046). There was a trend towards a decrease in the remission frequency after the first line of therapy ( p = 0.060) and deterioration in overall survival (OS) ( p = 0.162) in patients with DLBCL with methylation of the MIR-34A promoter. The methylation of the MIR-34A , MIR-34B/C , MIR-129-2 and MIR-203 genes in DLBCL is tumor-specific and occurs in combination. The methylation of the studied genes may be a potential differential diagnostic biomarker to distinguish between lymphoma and reactive lymph nodes, while its independent predictive value has not been confirmed yet.
Keyphrases
- cell proliferation
- long non coding rna
- genome wide
- long noncoding rna
- diffuse large b cell lymphoma
- dna methylation
- poor prognosis
- lymph node
- high resolution
- healthcare
- mass spectrometry
- stem cells
- rheumatoid arthritis
- multiple sclerosis
- squamous cell carcinoma
- risk assessment
- transcription factor
- genome wide identification
- copy number
- bioinformatics analysis
- sentinel lymph node