Reference genes for gene expression profiling in mouse models of Listeria monocytogenes infection.
Lethicia Souza TavaresRoberta Lane de Oliveira SilvaMarcelo Tigre MouraJéssica Barboza da SilvaAna Maria Benko-IsepponJosé Vitor Lima-FilhoPublished in: BioTechniques (2023)
RT-qPCR dissects transcription-based processes but requires reference genes (RGs) for data normalization. This study prospected RGs for mouse macrophages (pMØ) and spleen infected with Listeria monocytogenes . The pMØ were infected in vitro with L. monocytogenes or vehicle for 4 h. Mice were injected with L. monocytogenes (or vehicle) and euthanized 24 h post-injection. The RGs came from a multispecies primer set, from the literature or designed here. The RG ranking relied on GeNorm, NormFinder, BestKeeper, Delta-CT and RefFinder. B2m - H3f3a - Ppia were the most stable RGs for pMØ, albeit RG indexes fine-tuned estimations of cytokine relative expression. Actβ-Ubc - Ppia were the best RGs for spleen but modestly impacted the cytokine relative expression. Hence, mouse models of L. monocytogenes require context-specific RGs for RT-qPCR, thus reinforcing its paramount contribution to accurate gene expression profiling.
Keyphrases
- listeria monocytogenes
- air pollution
- genome wide
- particulate matter
- gene expression
- genome wide identification
- mouse model
- poor prognosis
- dna methylation
- heavy metals
- polycyclic aromatic hydrocarbons
- systematic review
- computed tomography
- copy number
- magnetic resonance imaging
- genome wide analysis
- electronic health record
- long non coding rna
- metabolic syndrome
- contrast enhanced
- ultrasound guided
- bioinformatics analysis
- mass spectrometry
- magnetic resonance
- insulin resistance
- image quality