A data resource from concurrent intracranial stimulation and functional MRI of the human brain.
William Hedley ThompsonRemya NairH OyaOscar EstebanJames M ShineChristopher I PetkovR A PoldrackM HowardR AdolphsPublished in: Scientific data (2020)
Mapping the causal effects of one brain region on another is a challenging problem in neuroscience that we approached through invasive direct manipulation of brain function together with concurrent whole-brain measurement of the effects produced. Here we establish a unique resource and present data from 26 human patients who underwent electrical stimulation during functional magnetic resonance imaging (es-fMRI). The patients had medically refractory epilepsy requiring surgically implanted intracranial electrodes in cortical and subcortical locations. One or multiple contacts on these electrodes were stimulated while simultaneously recording BOLD-fMRI activity in a block design. Multiple runs exist for patients with different stimulation sites. We describe the resource, data collection process, preprocessing using the fMRIPrep analysis pipeline and management of artifacts, and provide end-user analyses to visualize distal brain activation produced by site-specific electrical stimulation. The data are organized according to the brain imaging data structure (BIDS) specification, and are available for analysis or future dataset contributions on openneuro.org including both raw and preprocessed data.
Keyphrases
- resting state
- functional connectivity
- electronic health record
- magnetic resonance imaging
- white matter
- end stage renal disease
- big data
- chronic kidney disease
- ejection fraction
- spinal cord injury
- high resolution
- endothelial cells
- radiation therapy
- machine learning
- cerebral ischemia
- peritoneal dialysis
- minimally invasive
- data analysis
- reduced graphene oxide
- contrast enhanced
- photodynamic therapy
- magnetic resonance
- subarachnoid hemorrhage