Literature-Based Discovery to Elucidate the Biological Links between Resistant Hypertension and COVID-19.
David KartchnerKevin McCoyJanhvi DubeyDongyu ZhangKevin ZhengRushda UmraniJames J KimCassie S MitchellPublished in: Biology (2023)
Multiple studies have reported new or exacerbated persistent or resistant hypertension in patients previously infected with COVID-19. We used literature-based discovery to identify and prioritize multi-scalar explanatory biology that relates resistant hypertension to COVID-19. Cross-domain text mining of 33+ million PubMed articles within a comprehensive knowledge graph was performed using SemNet 2.0. Unsupervised rank aggregation determined which concepts were most relevant utilizing the normalized HeteSim score. A series of simulations identified concepts directly related to COVID-19 and resistant hypertension or connected via one of three renin-angiotensin-aldosterone system hub nodes (mineralocorticoid receptor, epithelial sodium channel, angiotensin I receptor). The top-ranking concepts relating COVID-19 to resistant hypertension included: cGMP-dependent protein kinase II, MAP3K1, haspin, ral guanine nucleotide exchange factor, N-(3-Oxododecanoyl)-L-homoserine lactone, aspartic endopeptidases, metabotropic glutamate receptors, choline-phosphate cytidylyltransferase, protein tyrosine phosphatase, tat genes, MAP3K10, uridine kinase, dicer enzyme, CMD1B, USP17L2, FLNA, exportin 5, somatotropin releasing hormone, beta-melanocyte stimulating hormone, pegylated leptin, beta-lipoprotein, corticotropin, growth hormone-releasing peptide 2, pro-opiomelanocortin, alpha-melanocyte stimulating hormone, prolactin, thyroid hormone, poly-beta-hydroxybutyrate depolymerase, CR 1392, BCR-ABL fusion gene, high density lipoprotein sphingomyelin, pregnancy-associated murine protein 1, recQ4 helicase, immunoglobulin heavy chain variable domain, aglycotransferrin, host cell factor C1, ATP6V0D1, imipramine demethylase, TRIM40, H3C2 gene, COL1A1+COL1A2 gene, QARS gene, VPS54, TPM2, MPST, EXOSC2, ribosomal protein S10, TAP-144, gonadotropins, human gonadotropin releasing hormone 1, beta-lipotropin, octreotide, salmon calcitonin, des-n-octanoyl ghrelin, liraglutide, gastrins. Concepts were mapped to six physiological themes: altered endocrine function, 23.1%; inflammation or cytokine storm, 21.3%; lipid metabolism and atherosclerosis, 17.6%; sympathetic input to blood pressure regulation, 16.7%; altered entry of COVID-19 virus, 14.8%; and unknown, 6.5%.
Keyphrases
- blood pressure
- coronavirus disease
- sars cov
- high density
- protein kinase
- genome wide
- growth hormone
- genome wide identification
- systematic review
- healthcare
- copy number
- hypertensive patients
- small molecule
- heart rate
- binding protein
- oxidative stress
- endothelial cells
- newly diagnosed
- single cell
- machine learning
- protein protein
- dna methylation
- cardiovascular disease
- high throughput
- chronic kidney disease
- metabolic syndrome
- stem cells
- angiotensin converting enzyme
- prognostic factors
- adipose tissue
- end stage renal disease
- amino acid
- deep learning
- radiation therapy
- molecular dynamics
- ejection fraction
- lymph node
- angiotensin ii
- early stage
- weight loss
- chronic myeloid leukemia
- genome wide analysis
- peritoneal dialysis
- fatty acid
- sentinel lymph node