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Mutation of GmIPK1 Gene Using CRISPR/Cas9 Reduced Phytic Acid Content in Soybean Seeds.

Ji Hyeon SongGilok ShinHye Jeong KimSaet Buyl LeeJu Yeon MoonJae Cheol JeongHong-Kyu ChoiIn Ah KimHyeon Jin SongCha Young KimYoung-Soo Chung
Published in: International journal of molecular sciences (2022)
Phytic acid (PA) acts as an antinutrient substance in cereal grains, disturbing the bioavailability of micronutrients, such as iron and zinc, in humans, causing malnutrition. GmIPK1 encodes the inositol 1,3,4,5,6-penta kis phosphate 2-kinase enzyme, which converts myo -inopsitol-1,3,4,5,6-penta kis phosphate (IP 5 ) to myo -inositol-1,2,3,4,5,6-hexakisphosphate (IP 6 ) in soybean ( Glycine max L.). In this study, for developing soybean with low PA levels, we attempted to edit the GmIPK1 gene using the CRISPR/ Cas9 system to introduce mutations into the GmIPK1 gene with guide RNAs in soybean (cv. Kwangankong). The GmIPK1 gene was disrupted using the CRISPR/Cas9 system, with sgRNA-1 and sgRNA-4 targeting the second and third exon, respectively. Several soybean Gmipk1 gene-edited lines were obtained in the T 0 generation at editing frequencies of 0.1-84.3%. Sequencing analysis revealed various indel patterns with the deletion of 1-9 nucleotides and insertions of 1 nucleotide in several soybean lines (T 0 ). Finally, we confirmed two sgRNA-4 Gmipk1 gene-edited homozygote soybean T 1 plants (line #21-2: 5 bp deletion; line #21-3: 1 bp insertion) by PPT leaf coating assay and PCR analysis. Analysis of soybean Gmipk1 gene-edited lines indicated a reduction in PA content in soybean T 2 seeds but did not show any defects in plant growth and seed development.
Keyphrases
  • crispr cas
  • genome editing
  • copy number
  • genome wide
  • genome wide identification
  • transcription factor
  • high throughput
  • plant growth
  • functional connectivity