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Extending the Range of Distances Accessible by 19 F Electron-Nuclear Double Resonance in Proteins Using High-Spin Gd(III) Labels.

Alexey V BogdanovVeronica FrydmanManas SealLeonid RapatskiyAlexander SchneggWenkai ZhuMark A IronAngela M GronenbornDaniella Goldfarb
Published in: Journal of the American Chemical Society (2024)
Fluorine electron-nuclear double resonance ( 19 F ENDOR) has recently emerged as a valuable tool in structural biology for distance determination between F atoms and a paramagnetic center, either intrinsic or conjugated to a biomolecule via spin labeling. Such measurements allow access to distances too short to be measured by double electron-electron resonance (DEER). To further extend the accessible distance range, we exploit the high-spin properties of Gd(III) and focus on transitions other than the central transition (|-1/2⟩ ↔ |+1/2⟩), that become more populated at high magnetic fields and low temperatures. This increases the spectral resolution up to ca. 7 times, thus raising the long-distance limit of 19 F ENDOR almost 2-fold. We first demonstrate this on a model fluorine-containing Gd(III) complex with a well-resolved 19 F spectrum in conventional central transition measurements and show quantitative agreement between the experimental spectra and theoretical predictions. We then validate our approach on two proteins labeled with 19 F and Gd(III), in which the Gd-F distance is too long to produce a well-resolved 19 F ENDOR doublet when measured at the central transition. By focusing on the |-5/2⟩ ↔ |-3/2⟩ and |-7/2⟩ ↔ |-5/2⟩ EPR transitions, a resolution enhancement of 4.5- and 7-fold was obtained, respectively. We also present data analysis strategies to handle contributions of different electron spin manifolds to the ENDOR spectrum. Our new extended 19 F ENDOR approach may be applicable to Gd-F distances as large as 20 Å, widening the current ENDOR distance window.
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