An Immune-Related lncRNA Pairing Model for Predicting the Prognosis and Immune-Infiltrating Cell Condition in Human Ovarian Cancer.
Xiaocui ZhangQing YangPublished in: BioMed research international (2022)
Ovarian cancer is the second common cancer among the gynecological tumors. It is difficult to be found and diagnosed in the early stage and easy to relapse due to chemoresistance and deficiency in choices of treatment. Therefore, future exploring the biomarkers for diagnosis, treatment, and prognosis prediction of ovarian cancer is significant to women in the world. We downloaded data from TCGA and GTEx and used R "limma" package for analyzing the differentially expressed immune-related lncRNA in ovarian cancer and finally got 7 downregulated and 171 upregulated lncRNA. Then, we paired the differentially expressed immune-related lncRNA and constructed a novel lncRNA pairing model containing 7 lncRNA pairs. Based on the cut-off point with the highest AUC value, 102 patients were selected in high-risk group and 272 in low-risk group. The KM analysis suggested that the patients in the low-risk group had a longer overall survival. Future analysis showed the correlations between risk scores and clinicopathological parameters and infiltrating immune cells. In conclusion, we identified an immune-related lncRNA pairing model for predicting the prognosis and immune-infiltrating cell condition in human ovarian cancer, which thus further can instruct immunotherapy.
Keyphrases
- long non coding rna
- end stage renal disease
- long noncoding rna
- early stage
- ejection fraction
- endothelial cells
- chronic kidney disease
- prognostic factors
- squamous cell carcinoma
- stem cells
- skeletal muscle
- wastewater treatment
- electronic health record
- radiation therapy
- adipose tissue
- metabolic syndrome
- cell therapy
- combination therapy
- bone marrow
- young adults
- insulin resistance
- deep learning
- pluripotent stem cells
- rectal cancer
- cervical cancer screening