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Comprehensive Identification of the Pum Gene Family and Its Involvement in Kernel Development in Maize.

Wenqi FengHongwanjun ZhangYang CaoCheng YangMuhammad Hayder Bin KhalidQingqing YangWanchen LiYingge WangFengling FuHaoqiang Yu
Published in: International journal of molecular sciences (2023)
The Pumilio (Pum) RNA-binding protein family regulates post-transcription and plays crucial roles in stress response and growth. However, little is known about Pum in plants. In this study, a total of 19 ZmPum genes were identified and classified into two groups in maize. Although each ZmPum contains the conserved Pum domain, the ZmPum members show diversity in the gene and protein architectures, physicochemical properties, chromosomal location, collinearity, cis-elements, and expression patterns. The typical ZmPum proteins have eight α-helices repeats, except for ZmPum2, 3, 5, 7, and 14, which have fewer α-helices. Moreover, we examined the expression profiles of ZmPum genes and found their involvement in kernel development. Except for ZmPum2 , ZmPum genes are expressed in maize embryos, endosperms, or whole seeds. Notably, ZmPum4 , 7 , and 13 exhibited dramatically high expression levels during seed development. The study not only contributes valuable information for further validating the functions of ZmPum genes but also provides insights for improvement and enhancing maize yield.
Keyphrases
  • binding protein
  • genome wide
  • bioinformatics analysis
  • genome wide identification
  • poor prognosis
  • transcription factor
  • genome wide analysis
  • dna methylation
  • healthcare
  • long non coding rna
  • small molecule