Tumor Immune Infiltration and Clinical Impact of Specific BCG-Related Genes in Melanoma.
He RenJiacheng HeJie DongGuoqian JiangJianlei HaoLiang HanPublished in: Journal of leukocyte biology (2024)
Melanoma, caused by malignant melanocytes, is known for its invasiveness and poor prognosis. Therapies are often ineffective due to their heterogeneity and resistance. Bacillus Calmette-Guérin (BCG), primarily a tuberculosis vaccine, shows potential in treating melanoma by activating immune responses. In this study, data from The Cancer Genome Atlas and the NCBI GEO database were utilized to determine pivotal differentially expressed genes (DEGs) such as DSC2, CXCR1, BOK, and CSTB, which are significantly upregulated in BCG treated blood samples and are strongly associated with the prognosis of melanoma. We employ tools like edgeR and ggplot2 for functional and pathway analysis and develop a prognostic model using LASSO Cox regression analysis to predict patient survival. A notable finding is the correlation between BCG-related genes and immune cell infiltration in melanoma, highlighting the potential of these genes as both biomarkers and therapeutic targets. Additionally, the study examines genetic alterations in these genes and their impact on the disease. This study highlights the necessity of further exploring BCG-related genes for insights into melanoma pathogenesis and treatment enhancement, suggesting that BCG's role in immune activation could offer novel therapeutic avenues in cancer treatment.
Keyphrases
- poor prognosis
- genome wide
- immune response
- skin cancer
- long non coding rna
- emergency department
- dna methylation
- basal cell carcinoma
- human immunodeficiency virus
- electronic health record
- signaling pathway
- risk assessment
- machine learning
- dendritic cells
- case report
- deep learning
- newly diagnosed
- toll like receptor
- young adults
- climate change
- artificial intelligence
- drug induced