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Nucleotide metabolism in cancer cells fuels a UDP-driven macrophage cross-talk, promoting immunosuppression and immunotherapy resistance.

Tommaso ScolaroMarta MancoMathieu PecqueuxRicardo AmorimRosa TrottaHeleen H Van AckerMatthias Van HaeleNiranjan ShirgaonkarStefan NaulaertsJan DanilukFran PrenenChiara VaramoDonatella PontiGinevra DoglioniAna Margarida Ferreira CamposJuan Fernández-GarcíaSilvia RadenkovicPegah RouhiAleksandar BeatovicLiwei WangYu WangAmalia TzoumpaAsier AntoranzAra SargsianMario Di MatteoEmanuele BerardiJermaine GoveiaBart GhesquiereTania RoskamsStefaan J SoenenThomas VoetsBella ManshianSarah-Maria FendtPeter CarmelietAbhishek Dinkarnath GargRamanuj DasGuptaBaki TopalMassimilliano Mazzone
Published in: Nature cancer (2024)
Many individuals with cancer are resistant to immunotherapies. Here, we identify the gene encoding the pyrimidine salvage pathway enzyme cytidine deaminase (CDA) among the top upregulated metabolic genes in several immunotherapy-resistant tumors. We show that CDA in cancer cells contributes to the uridine diphosphate (UDP) pool. Extracellular UDP hijacks immunosuppressive tumor-associated macrophages (TAMs) through its receptor P2Y 6 . Pharmacologic or genetic inhibition of CDA in cancer cells (or P2Y 6 in TAMs) disrupts TAM-mediated immunosuppression, promoting cytotoxic T cell entry and susceptibility to anti-programmed cell death protein 1 (anti-PD-1) treatment in resistant pancreatic ductal adenocarcinoma (PDAC) and melanoma models. Conversely, CDA overexpression in CDA-depleted PDACs or anti-PD-1-responsive colorectal tumors or systemic UDP administration (re)establishes resistance. In individuals with PDAC, high CDA levels in cancer cells correlate with increased TAMs, lower cytotoxic T cells and possibly anti-PD-1 resistance. In a pan-cancer single-cell atlas, CDA high cancer cells match with T cell cytotoxicity dysfunction and P2RY6 high TAMs. Overall, we suggest CDA and P2Y 6 as potential targets for cancer immunotherapy.
Keyphrases
  • single cell
  • genome wide
  • papillary thyroid
  • copy number
  • rna seq
  • squamous cell
  • gene expression
  • adipose tissue
  • cell proliferation
  • cancer therapy
  • transcription factor
  • young adults
  • basal cell carcinoma