Calculation of absolute molecular entropies and heat capacities made simple.
Philipp PrachtStefan GrimmePublished in: Chemical science (2021)
We propose a fully-automated composite scheme for the accurate and numerically stable calculation of molecular entropies by efficiently combining density-functional theory (DFT), semi-empirical methods (SQM), and force-field (FF) approximations. The scheme is systematically expandable and can be integrated seamlessly with continuum-solvation models. Anharmonic effects are included through the modified rigid-rotor-harmonic-oscillator (msRRHO) approximation and the Gibbs-Shannon formula for extensive conformer ensembles (CEs), which are generated by a metadynamics search algorithm and are extrapolated to completeness. For the first time, variations of the ro-vibrational entropy over the CE are consistently accounted-for through a Boltzmann-population average. Extensive tests of the protocol with the two standard DFT approaches B97-3c and B3LYP-D3 reveal an unprecedented accuracy with mean deviations <1 cal mol-1 K-1 (about <1-2%) for the total gas phase molecular entropy of medium-sized molecules. Even for the hardship case of extremely flexible linear alkanes (C14H30-C16H34), errors are only about 3 cal mol-1 K-1. Comprehensive tests indicate a relatively strong variation of the conformational entropy on the underlying level of theory for typical drug molecules, inferring the complex potential energy surfaces as the main source of error. Furthermore, we show some application examples for the calculation of free energy differences in typical chemical reactions.
Keyphrases
- density functional theory
- molecular dynamics
- single molecule
- molecular dynamics simulations
- machine learning
- randomized controlled trial
- monte carlo
- high throughput
- high resolution
- ionic liquid
- patient safety
- gene expression
- climate change
- staphylococcus aureus
- mass spectrometry
- pseudomonas aeruginosa
- risk assessment
- preterm infants
- heat stress
- visible light
- preterm birth
- quality improvement
- biofilm formation