Evolution of gene dosage on the Z-chromosome of schistosome parasites.
Marion A L PicardCeline CosseauSabrina FerréThomas QuackChristoph G GreveldingYohann CoutBeatriz VicosoPublished in: eLife (2018)
XY systems usually show chromosome-wide compensation of X-linked genes, while in many ZW systems, compensation is restricted to a minority of dosage-sensitive genes. Why such differences arose is still unclear. Here, we combine comparative genomics, transcriptomics and proteomics to obtain a complete overview of the evolution of gene dosage on the Z-chromosome of Schistosoma parasites. We compare the Z-chromosome gene content of African (Schistosoma mansoni and S. haematobium) and Asian (S. japonicum) schistosomes and describe lineage-specific evolutionary strata. We use these to assess gene expression evolution following sex-linkage. The resulting patterns suggest a reduction in expression of Z-linked genes in females, combined with upregulation of the Z in both sexes, in line with the first step of Ohno's classic model of dosage compensation evolution. Quantitative proteomics suggest that post-transcriptional mechanisms do not play a major role in balancing the expression of Z-linked genes.
Keyphrases
- genome wide
- copy number
- genome wide identification
- dna methylation
- gene expression
- poor prognosis
- transcription factor
- genome wide analysis
- single cell
- mass spectrometry
- bioinformatics analysis
- long non coding rna
- signaling pathway
- binding protein
- oxidative stress
- human immunodeficiency virus
- plasmodium falciparum
- cell proliferation
- hiv testing
- hiv infected
- label free
- men who have sex with men
- heat stress
- heat shock protein