Partial gene suppression improves identification of cancer vulnerabilities when CRISPR-Cas9 knockout is pan-lethal.
J Michael Krill-BurgerJoshua M DempsterAshir A BorahBrenton R PaolellaDavid E RootTodd R GolubJesse S BoehmWilliam C HahnJames M McFarlandFrancisca VazquezAviad TsherniakPublished in: Genome biology (2023)
Incorporating RNAi data for genes that are pan-lethal knockouts facilitates the discovery of a wider range of gene targets than could be detected using the CRISPR dataset alone. This can aid in the interpretation of contrasting results obtained from CRISPR and RNAi screens and reinforce the importance of partial gene suppression methods in building a cancer dependency map.