Chitoporin from Serratia marcescens: recombinant expression, purification and crystallization.
Rawiporn AmornloetwattanaRobert Charles RobinsonHannadige Sasimali Madusanka SoysaBert van den BergWipa SugintaPublished in: Acta crystallographica. Section F, Structural biology communications (2020)
Serratia marcescens is an opportunistic pathogen that commonly causes hospital-acquired infections and can utilize chitin-enriched nutrients as an alternative energy source. This study reports the identification of a chitoporin (ChiP), termed SmChiP, from the outer membrane of S. marcescens. Sequence alignment with genetically characterized ChiPs suggests that SmChiP is more closely related to the monomeric EcChiP from Escherichia coli than to the trimeric VhChiP from Vibrio campbellii. A single crystal of SmChiP grown under the condition 22%(w/v) PEG 8000, 0.1 M calcium acetate, 0.1 M MES pH 6.0 diffracted X-ray synchrotron radiation to 1.85 Å resolution. SmChiP co-crystallized with chitohexaose under the condition 19%(w/v) PEG 1500, 2 M ammonium phosphate monobasic, 0.1 M HEPES pH 7.0 diffracted X-rays to 2.70 Å resolution. Preliminary crystallographic analysis shows that both SmChiP crystal forms contain one molecule per asymmetric unit and that they belong to the tetragonal space groups P42212 and P41212, respectively. The SmChiP crystal has unit-cell parameters a = 82.97, b = 82.97, c = 189.53 Å, α = β = γ = 90°, while the crystal of SmChiP in complex with chitohexaose has unit-cell parameters a = 73.24, b = 73.24, c = 213.46 Å, α = β = γ = 90°. Initial assessment of the complex structure clearly revealed electron density for the sugar ligand. Structure determination of SmChiP in the absence and presence of chitohexaose should reveal the molecular basis of chitin utilization by S. marcescens.
Keyphrases
- single cell
- escherichia coli
- solid state
- cell therapy
- drug delivery
- high throughput
- healthcare
- poor prognosis
- single molecule
- magnetic resonance imaging
- genome wide
- biofilm formation
- gene expression
- stem cells
- pseudomonas aeruginosa
- binding protein
- staphylococcus aureus
- radiation therapy
- cystic fibrosis
- heavy metals
- long non coding rna
- solid phase extraction
- circulating tumor cells
- electron microscopy
- solar cells
- klebsiella pneumoniae
- bioinformatics analysis