Clinical Phenotyping with an Outcomes-driven Mixture of Experts for Patient Matching and Risk Estimation.
Nathan C HurleySanket S DhruvaNihar R DesaiJoseph R RossChe G NguforFrederick A MasoudiHarlan M KrumholzBobak J MortazaviPublished in: ACM transactions on computing for healthcare (2023)
Observational medical data present unique opportunities for analysis of medical outcomes and treatment decision making. However, because these datasets do not contain the strict pairing of randomized control trials, matching techniques are to draw comparisons among patients. A key limitation to such techniques is verification that the variables used to model treatment decision making are also relevant in identifying the risk of major adverse events. This article explores a deep mixture of experts approach to jointly learn how to match patients and model the risk of major adverse events in patients. Although trained with information regarding treatment and outcomes, after training, the proposed model is decomposable into a network that clusters patients into phenotypes from information available before treatment. This model is validated on a dataset of patients with acute myocardial infarction complicated by cardiogenic shock. The mixture of experts approach can predict the outcome of mortality with an area under the receiver operating characteristic curve of 0.85 ± 0.01 while jointly discovering five potential phenotypes of interest. The technique and interpretation allow for identifying clinically relevant phenotypes that may be used both for outcomes modeling as well as potentially evaluating individualized treatment effects.
Keyphrases
- end stage renal disease
- acute myocardial infarction
- decision making
- newly diagnosed
- chronic kidney disease
- healthcare
- coronary artery disease
- type diabetes
- machine learning
- metabolic syndrome
- cross sectional
- skeletal muscle
- electronic health record
- replacement therapy
- patient reported outcomes
- high throughput
- deep learning
- rna seq