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Protocol: a versatile, inexpensive, high-throughput plant genomic DNA extraction method suitable for genotyping-by-sequencing.

Craig B AndersonBenjamin K FranzmayrSoon Won HongAnna C LarkingTracey C van StijnRachel TanRoger MoragaMarty J FavilleAndrew G Griffiths
Published in: Plant methods (2018)
This versatile, scalable and simple protocol yields high molecular weight genomic DNA suitable for restriction enzyme digestion and next-generation sequencing applications including GBS and long-read sequencing platforms such as PacBio. The low cost, high-throughput, and extraction of high quality gDNA from a range of fresh and dried source plant material makes this method suitable for many sequencing and genotyping applications including large-scale sample screening underpinning breeding programmes.
Keyphrases
  • high throughput
  • single cell
  • circulating tumor
  • low cost
  • single molecule
  • copy number
  • randomized controlled trial
  • genome wide
  • nucleic acid
  • cell wall
  • dna methylation