Presence of onco-fetal neighborhoods in hepatocellular carcinoma is associated with relapse and response to immunotherapy.
Ziyi LiRhea PaiSaurabh GuptaJennifer CurrentiWei GuoAnna Di BartolomeoHao FengZi-Jie ZhangZhizhen LiLongqi LiuAbhishek SinghYinqi BaiBicheng YangArchita MishraKatharine YangLiang QiaoMichael WallaceYujia YinQiang XiaJerry Kok Yen ChanJacob GeorgePierce Kah-Hoe ChowFlorent GinhouxAnkur SharmaPublished in: Nature cancer (2024)
Onco-fetal reprogramming of the tumor ecosystem induces fetal developmental signatures in the tumor microenvironment, leading to immunosuppressive features. Here, we employed single-cell RNA sequencing, spatial transcriptomics and bulk RNA sequencing to delineate specific cell subsets involved in hepatocellular carcinoma (HCC) relapse and response to immunotherapy. We identified POSTN + extracellular matrix cancer-associated fibroblasts (EM CAFs) as a prominent onco-fetal interacting hub, promoting tumor progression. Cell-cell communication and spatial transcriptomics analysis revealed crosstalk and co-localization of onco-fetal cells, including POSTN + CAFs, FOLR2 + macrophages and PLVAP + endothelial cells. Further analyses suggest an association between onco-fetal reprogramming and epithelial-mesenchymal transition (EMT), tumor cell proliferation and recruitment of T reg cells, ultimately influencing early relapse and response to immunotherapy. In summary, our study identifies POSTN + CAFs as part of the HCC onco-fetal niche and highlights its potential influence in EMT, relapse and immunotherapy response, paving the way for the use of onco-fetal signatures for therapeutic stratification.
Keyphrases
- single cell
- rna seq
- epithelial mesenchymal transition
- extracellular matrix
- high throughput
- cell proliferation
- endothelial cells
- induced apoptosis
- cell therapy
- genome wide
- dna methylation
- bone marrow
- stem cells
- climate change
- mesenchymal stem cells
- risk assessment
- poor prognosis
- network analysis
- protein kinase
- cell death
- long non coding rna