Varia: a tool for prediction, analysis and visualisation of variable genes.

Gavin MackenzieRasmus W JensenThomas LavstsenThomas Dan Otto

Published in: BMC bioinformatics (2022)

Prediction of var sequence and domain composition is possible from short sequence tags. Varia can be used to guide experimental validation of PfEMP1 sequences of interest and conduct high-throughput analysis of var type expression in patient samples.

Keyphrases

high throughput
poor prognosis
case report
genome wide
amino acid
single cell
binding protein
gene expression
transcription factor
genome wide analysis
genetic diversity