Implementing Systems Modelling and Molecular Imaging to Predict the Efficacy of BCL-2 Inhibition in Colorectal Cancer Patient-Derived Xenograft Models.
Alice C O'FarrellMonika A JarzabekAndreas U LindnerSteven CarberryEmer ConroyIan S MillerKate ConnorLiam ShielsEugenia R ZanellaFederico LucantoniAdam LaffertyKieron WhiteMariangela Meyer Meyer VillamandosPatrick DickerWilliam M GallagherSimon A KeekSebastian SanduleanuPhilippe LambinHenry C WoodruffAndrea BertottiLivio TrusolinoAnnette T ByrneJochen H M PrehnPublished in: Cancers (2020)
Resistance to chemotherapy often results from dysfunctional apoptosis, however multiple proteins with overlapping functions regulate this pathway. We sought to determine whether an extensively validated, deterministic apoptosis systems model, 'DR_MOMP', could be used as a stratification tool for the apoptosis sensitiser and BCL-2 antagonist, ABT-199 in patient-derived xenograft (PDX) models of colorectal cancer (CRC). Through quantitative profiling of BCL-2 family proteins, we identified two PDX models which were predicted by DR_MOMP to be sufficiently sensitive to 5-fluorouracil (5-FU)-based chemotherapy (CRC0344), or less responsive to chemotherapy but sensitised by ABT-199 (CRC0076). Treatment with ABT-199 significantly improved responses of CRC0076 PDXs to 5-FU-based chemotherapy, but showed no sensitisation in CRC0344 PDXs, as predicted from systems modelling. 18F-Fluorodeoxyglucose positron emission tomography/computed tomography (18F-FDG-PET/CT) scans were performed to investigate possible early biomarkers of response. In CRC0076, a significant post-treatment decrease in mean standard uptake value was indeed evident only in the combination treatment group. Radiomic CT feature analysis of pre-treatment images in CRC0076 and CRC0344 PDXs identified features which could phenotypically discriminate between models, but were not predictive of treatment responses. Collectively our data indicate that systems modelling may identify metastatic (m)CRC patients benefitting from ABT-199, and that 18F-FDG-PET could independently support such predictions.
Keyphrases
- positron emission tomography
- computed tomography
- oxidative stress
- pet ct
- squamous cell carcinoma
- magnetic resonance imaging
- cell death
- small cell lung cancer
- chronic kidney disease
- end stage renal disease
- newly diagnosed
- machine learning
- radiation therapy
- deep learning
- pet imaging
- endoplasmic reticulum stress
- cell cycle arrest
- combination therapy
- big data
- replacement therapy
- multidrug resistant
- artificial intelligence
- prognostic factors
- mass spectrometry
- drug delivery
- convolutional neural network
- peritoneal dialysis