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Validation of a Novel Three-Dimensional ( 3D Fusion ) Gross Sampling Protocol for Clear Cell Renal Cell Carcinoma to Overcome Intratumoral Heterogeneity: The Meet-Uro 18 Study.

Matteo BrunelliGuido MartignoniGiorgio MalpeliAlessandro VolpeLuca CimaMaria Rosaria RaspolliniMattia BarbareschiAlessandro TafuriGiulia MasiLuisa BarzonSerena AmmendolaManuela VillanovaMaria Angela CerrutoMichele MilellaSebastiano ButiMelissa BersanelliGiuseppe FornariniSara Elena RebuzziValerio Gaetano VelloneGabriele GaggeroGiuseppe ProcopioElena VerzoniSergio BracardaMartina FanelliRoberto SabbatiniRodolfo PassalacquaBruno PerrucciMaria Olga GigantiMaddalena DoniniStefano PanniMarcello TucciVeronica PratiCinzia OrtegaAnna CaliòAlbino EccherFilippo AlongiGiovanni PappagalloRoberto IacovelliAlessandra MoscaPaolo UmariIlaria MontagnaniStefano GobboFrancesco AtzoriEnrico MunariMarco MaruzzoUmberto BassoFrancesco PiercontiCarlo PatriarcaPiergiuseppe ColomboAlberto LapiniGiario ContiRoberto SalvioniEnrico BollitoAndrea CossarizzaFrancesco MassariMimma RizzoRenato FrancoFederica Zito-MarinoYoseba Aberasturi PlataFrancesca GaluppiniMarta SbaragliaAngelo Paolo Dei TosAngelo Paolo Dei TosMaurizio ColecchiaHolger MochMaurizio ScaltritiCamillio PortaBrett DelahuntGianluca GiannariniRoberto BortolusPasquale RescignoGiuseppe Luigi BannaAlessio SignoriMiguel Angel Llaja ObispoRoberto PerrisAlessandro Antonelli
Published in: Journal of personalized medicine (2022)
We aimed to overcome intratumoral heterogeneity in clear cell renal cell carcinoma (clearRCC). One hundred cases of clearRCC were sampled. First, usual standard sampling was applied (1 block/cm of tumor); second, the whole tumor was sampled, and 0.6 mm cores were taken from each block to construct a tissue microarray; third, the residual tissue, mapped by taking pieces 0.5 × 0.5 cm, reconstructed the entire tumor mass. Precisely, six randomly derived pieces of tissues were placed in each cassette, with the number of cassettes being based on the diameter of the tumor (called multisite 3D fusion). Angiogenic and immune markers were tested. Routine 5231 tissue blocks were obtained. Multisite 3D fusion sections showed pattern A, homogeneous high vascular density (10%), pattern B, homogeneous low vascular density (8%) and pattern C, heterogeneous angiogenic signatures (82%). PD-L1 expression was seen as diffuse (7%), low (33%) and absent (60%). Tumor-infiltrating CD8 scored high in 25% (pattern hot), low in 65% (pattern weak) and zero in 10% of cases (pattern desert). Grading was upgraded in 26% of cases (G3-G4), necrosis and sarcomatoid/rhabdoid characters were observed in, respectively, 11 and 7% of cases after 3D fusion ( p = 0.03). CD8 and PD-L1 immune expressions were higher in the undifferentiated G4/rhabdoid/sarcomatoid clearRCC subtypes ( p = 0.03). Again, 22% of cases were set to intermediate to high risk of clinical recurrence due to new morphological findings of all aggressive G4, sarcomatoid/rhabdoid features by using 3D fusion compared to standard methods ( p = 0.04). In conclusion, we propose an easy-to-apply multisite 3D fusion sampling that negates bias due to tumor heterogeneity.
Keyphrases
  • single cell
  • gene expression
  • randomized controlled trial
  • dna methylation
  • low grade
  • high grade