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Poly-γ-glutamylation of biomolecules.

Ghader BashiriEsther M M BullochWilliam R BramleyMadison DavidsonStephanie M StuteleyPaul G YoungPaul W R HarrisMuhammad S H NaqviMartin J MiddleditchMichael SchmitzWei-Chen ChangEdward N BakerChristopher J Squire
Published in: Nature communications (2024)
Poly-γ-glutamate tails are a distinctive feature of archaeal, bacterial, and eukaryotic cofactors, including the folates and F 420 . Despite decades of research, key mechanistic questions remain as to how enzymes successively add glutamates to poly-γ-glutamate chains while maintaining cofactor specificity. Here, we show how poly-γ-glutamylation of folate and F 420 by folylpolyglutamate synthases and γ-glutamyl ligases, non-homologous enzymes, occurs via processive addition of L-glutamate onto growing γ-glutamyl chain termini. We further reveal structural snapshots of the archaeal γ-glutamyl ligase (CofE) in action, crucially including a bulged-chain product that shows how the cofactor is retained while successive glutamates are added to the chain terminus. This bulging substrate model of processive poly-γ-glutamylation by terminal extension is arguably ubiquitous in such biopolymerisation reactions, including addition to folates, and demonstrates convergent evolution in diverse species from archaea to humans.
Keyphrases
  • machine learning
  • single cell
  • genome wide
  • deep learning
  • oxidative stress