GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations.

Nancy ManchandaJohn L PortwoodMargaret R WoodhouseArun S SeetharamCarolyn J Lawrence-DillCarson M AndorfMatthew B Hufford

Published in: BMC genomics (2020)

The GenomeQC web application is implemented in R/Shiny version 1.5.9 and Python 3.6 and is freely available at https://genomeqc.maizegdb.org/ under the GPL license. All source code and a containerized version of the GenomeQC pipeline is available in the GitHub repository https://github.com/HuffordLab/GenomeQC.

Keyphrases

psychometric properties
genome wide
copy number
dna methylation
quality improvement
gene expression
transcription factor