Matthew B Hufford

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 14

Top Venues

Nature genetics

Genome research

Proceedings of the National Academy of Sciences of the United States of America

Genome biology

Iowa State University

University of California Davis (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Iowa State University

United States

Assistant Professor :: Ecology, Evolution, and Organismal Biology

Education History

University of California Davis

United States

PHD

University of California Davis

United States

MSC

Wheaton College

United States

BSC

Publications

Shujun Ou, Armin Scheben, Tyler Collins, Yinjie Qiu, Arun S Seetharam, Claire C Menard, Nancy Manchanda, Jonathan I Gent, Michael C Schatz, Sarah N Anderson, Matthew B Hufford, Candice N Hirsch
Differences in activity and stability drive transposable element variation in tropical and temperate maize. Genome research (2024)
Jian Chen, Zijian Wang, Kaiwen Tan, Wei Huang, Junpeng Shi, Tong Li, Jiang Hu, Kai Wang, Chao Wang, Beibei Xin, Haiming Zhao, Weibin Song, Matthew B Hufford, Osler A Ortez, Weiwei Jin, Jinsheng Lai
A complete telomere-to-telomere assembly of the maize genome. Nature genetics (2023)
Garrett M Janzen, María Rocío Aguilar-Rangel, Carolina Cíntora-Martínez, Karla Azucena Blöcher-Juárez, Eric González-Segovia, Anthony J Studer, Daniel E Runcie, Sherry A Flint-Garcia, Rubén Rellán Álvarez, Ruairidh J H Sawers, Matthew B Hufford
Demonstration of local adaptation in maize landraces by reciprocal transplantation. Evolutionary applications 15 (5) (2022)
Allison C Barnes, Fausto Rodríguez-Zapata, Karla Azucena Blöcher-Juárez, Daniel J Gates, Garrett M Janzen, Andi Kur, Li Wang, Sarah E Jensen, Juan M Estévez-Palmas, Taylor M Crow, Heli S Kavi, Hannah D Pil, Ruthie L Stokes, Kevan T Knizner, María Rocío Aguilar-Rangel, Edgar Demesa-Arévalo, Tara Skopelitis, Sergio Pérez-Limón, Whitney L Stutts, Peter M Thompson, Yu-Chun Chiu, David P Jackson, David C Muddiman, Oliver Fiehn, Daniel Runcie, Edward S Buckler, Jeffrey Ross-Ibarra, Matthew B Hufford, Ruairidh J H Sawers, Rubén Rellán Álvarez
An adaptive teosinte mexicana introgression modulates phosphatidylcholine levels and is associated with maize flowering time. Proceedings of the National Academy of Sciences of the United States of America 119 (27) (2022)
Lu Chen, Jingyun Luo, Minliang Jin, Ning Yang, Xiangguo Liu, Yong Peng, Wenqiang Li, Alyssa Phillips, Brenda Cameron, Julio S Bernal, Rubén Rellán Álvarez, Ruairidh J H Sawers, Qing Liu, Yuejia Yin, Xinnan Ye, Jiali Yan, Qinghua Zhang, Xiaoting Zhang, Shenshen Wu, Songtao Gui, Wenjie Wei, Yuebin Wang, Yun Luo, Chenglin Jiang, Min Deng, Min Jin, Liumei Jian, Yanhui Yu, Maolin Zhang, Xiaohong Yang, Matthew B Hufford, Alisdair Robert Fernie, Marilyn L Warburton, Jeffrey Ross-Ibarra, Jianbing Yan
Genome sequencing reveals evidence of adaptive variation in the genus Zea. Nature genetics 54 (11) (2022)
Sergio Pérez-Limón, Meng Li, G Carolina Cintora-Martinez, María Rocío Aguilar-Rangel, M Nancy Salazar-Vidal, Eric Gerardo Gonzalez Segovia, Karla Azucena Blöcher-Juárez, Alejandro Guerrero-Zavala, Benjamin Barrales-Gamez, Jessica Carcaño-Macias, Denise E Costich, Jorge Nieto-Sotelo, Octavio Martínez de la Vega, June Simpson, Matthew B Hufford, Jeffrey Ross-Ibarra, Sherry A Flint-Garcia, Luis Diaz-Garcia, Rubén Rellán Álvarez, Ruairidh J H Sawers
A B73×Palomero Toluqueño mapping population reveals local adaptation in Mexican highland maize. G3 (Bethesda, Md.) 12 (3) (2022)
Baoxing Song, Edward S Buckler, Hai Wang, Yaoyao Wu, Evan Rees, Elizabeth A Kellogg, Daniel J Gates, Merritt Khaipho-Burch, Peter J Bradbury, Jeffrey Ross-Ibarra, Matthew B Hufford, M Cinta Romay
Conserved noncoding sequences provide insights into regulatory sequence and loss of gene expression in maize. Genome research (2021)
Matthew B Hufford, Arun S Seetharam, Margaret R Woodhouse, Kapeel M Chougule, Shujun Ou, Jianing Liu, William A Ricci, Tingting Guo, Andrew Olson, Yinjie Qiu, Rafael Della Coletta, Silas B Tittes, Asher I Hudson, Alexandre P Marand, Sharon Wei, Zhenyuan Lu, Bo Wang, Marcela Karey Tello-Ruiz, Rebecca D Piri, Na Wang, Dong Won Kim, Yibing Zeng, Christine H O'Connor, Xianran Li, Amanda M Gilbert, Erin L Baggs, Ksenia V Krasileva, John L Portwood, Ethalinda K S Cannon, Carson M Andorf, Nancy Manchanda, Samantha J Snodgrass, David E Hufnagel, Qiuhan Jiang, Sarah Pedersen, Michael L Syring, David A Kudrna, Victor Llaca, Kevin Fengler, Robert J Schmitz, Jeffrey Ross-Ibarra, Jianming Yu, Jonathan I Gent, Candice N Hirsch, Doreen H Ware, R Kelly Dawe
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes. Science (New York, N.Y.) 373 (6555) (2021)
Shujun Ou, Jianing Liu, Kapeel M Chougule, Arkarachai Fungtammasan, Arun S Seetharam, Joshua C Stein, Victor Llaca, Nancy Manchanda, Amanda M Gilbert, Sharon Wei, Chen-Shan Chin, David E Hufnagel, Sarah Pedersen, Samantha J Snodgrass, Kevin Fengler, Margaret R Woodhouse, Brian P Walenz, Sergey Koren, Adam M Phillippy, Brett T Hannigan, R Kelly Dawe, Candice N Hirsch, Matthew B Hufford, Doreen H Ware
Effect of sequence depth and length in long-read assembly of the maize inbred NC358. Nature communications 11 (1) (2020)
Nancy Manchanda, John L Portwood, Margaret R Woodhouse, Arun S Seetharam, Carolyn J Lawrence-Dill, Carson M Andorf, Matthew B Hufford
GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations. BMC genomics 21 (1) (2020)
Baobao Wang, Zechuan Lin, Xin Li, Yongping Zhao, Binbin Zhao, Guangxia Wu, Xiaojing Ma, Hai Wang, Yurong Xie, Quanquan Li, Guangshu Song, Dexin Kong, Zhigang Zheng, Hongbin Wei, Rongxin Shen, Hong Wu, Cuixia Chen, Zhaodong Meng, Tianyu Wang, Yu Li, Xinhai Li, Yanhui Chen, Jinsheng Lai, Matthew B Hufford, Jeffrey Ross-Ibarra, Hang He, Hai-Yang Wang
Genome-wide selection and genetic improvement during modern maize breeding. Nature genetics 52 (6) (2020)
Shujun Ou, Weija Su, Yi Liao, Kapeel Chougule, Jireh R A Agda, Adam J Hellinga, Carlos Santiago Blanco Lugo, Tyler A Elliott, Doreen Ware, Thomas Peterson, Ning Jiang, Candice N Hirsch, Matthew B Hufford
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline. Genome biology 20 (1) (2019)
Stephanie M Coffman, Matthew B Hufford, Carson M Andorf, Thomas Lübberstedt
Haplotype structure in commercial maize breeding programs in relation to key founder lines. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 133 (2) (2019)
Garrett M Janzen, Li Wang, Matthew B Hufford
The extent of adaptive wild introgression in crops. The New phytologist 221 (3) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Matthew B Hufford