REViewer: haplotype-resolved visualization of read alignments in and around tandem repeats.
Egor DolzhenkoBen WeisburdKristina IbañezIndhu-Shree Rajan-BabuChristine AnyansiMark F BennettKimberley BillingsleyAshley CarrollSamuel ClamonsMatt C DanziViraj DeshpandeJinhui DingSarah FazalAndreas HalmanBharati JadhavYunjiang QiuPhillip A RichmondChristopher T SaundersKonrad SchefflerJoke J F A van VugtRamona R A J Zwambornnull nullSamuel S ChongJan M FriedmanArianna TucciHeidi L RehmMichael A EberlePublished in: Genome medicine (2022)
Read pileup plots generated by REViewer offer an intuitive way to visualize sequencing data in regions containing long repeat expansions. Laboratories can use REViewer and FlipBook to assess the quality of repeat genotype calls as well as to visually detect interruptions or other imperfections in the repeat sequence and the surrounding flanking regions. REViewer and FlipBook are available under open-source licenses at https://github.com/illumina/REViewer and https://github.com/broadinstitute/flipbook respectively.