Screening for Genes Related to Meat Production Traits in Duroc × Bama Xiang Crossbred Pigs by Whole Transcriptome Sequencing.
Yupei XuHui WangFeng ChengKuirong ChenGuofeng LeiZhongrong DengXiaoxiao WuCong LiuJinglei SiJing LiangPublished in: Animals : an open access journal from MDPI (2024)
The meat production traits of pigs are influenced by the expression regulation of multiple gene types, including mRNAs, miRNAs, and lncRNAs. To study the differences in meat production traits at the transcriptional level among individuals with different growth rates, the longissimus dorsi samples from eight Duroc × Bama Xiang F2 crossbred pigs with a fast growth rate (high gTroup) or a slow growth rate (low group) were selected to perform whole transcriptome sequencing and ceRNA regulatory network construction. This study first analyzed the differences in physiological and biochemical indicators, muscle histological characteristics, and muscle fiber types. A total of 248 mRNAs, 25 miRNAs, and 432 lncRNAs were identified as differentially expressed by whole transcriptome sequencing. Key genes that may influence meat production traits include MTMR14 , PPP1R3A , PYGM , PGAM2 , MYH1 , and MYH7 . The ceRNA regulatory network map showed that ENSSSCG00000042061-ssc-mir-208b- MYH7 , ENSSSCG00000042223-ssc-mir-146a- MTMR14 , ENSSSCG00000045539-ssc-mir-9-3- MYH1 , and ENSSSCG00000047852-ssc-mir-103-1- PPP1R3A may be the key factors affecting meat production traits through their regulatory relationships. This study provides valuable insights into the molecular mechanisms underlying porcine muscle development and can aid in improving meat production traits.
Keyphrases
- genome wide
- long non coding rna
- single cell
- cell proliferation
- dna methylation
- gene expression
- transcription factor
- hypertrophic cardiomyopathy
- skeletal muscle
- rna seq
- poor prognosis
- copy number
- genome wide analysis
- long noncoding rna
- oxidative stress
- left ventricular
- single molecule
- heat shock
- atrial fibrillation
- heat stress