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Aberrant expression of a novel circular RNA in pancreatic cancer.

Takahiro SeimiyaMotoyuki OtsukaTakuma IwataEri TanakaKazuma SekibaChikako ShibataMasaru MoriyamaRyo NakagawaReo MaruyamaKazuhiko Koike
Published in: Journal of human genetics (2020)
Circular RNAs (circRNAs) are single-stranded, covalently closed RNA molecules that are produced from pre-mRNAs through a process known as back-splicing. Although circRNAs are expressed under specific conditions, current understanding of their comprehensive expression status is still limited. Here, we performed a large-scale circRNA profiling analysis in human pancreatic ductal adenocarcinoma (PDAC) tissues, using circular RNA-specific RNA sequencing. We identified more than 40,000 previously unknown circRNAs, some of which were upregulated in PDAC tissues, compared with normal pancreatic tissues. We determined the full-length sequence of a circRNA upregulated in PDAC, which was derived from two noncoding RNA loci on chromosome 12. The novel circRNA, named circPDAC RNA, was not expressed in normal human cells, but was expressed in PDAC and other carcinoma cells. While postulated biological functions, such as peptide production from the circPDAC RNA, were not detected, its aberrant expression was confirmed in other PDAC tissues and in serum from a PDAC patient. These results demonstrate that comprehensive studies are necessary to reveal the expression status of circRNAs and that the circPDAC RNA identified here might serve as a novel biomarker for cancers, including PDAC.
Keyphrases
  • poor prognosis
  • gene expression
  • binding protein
  • single cell
  • nucleic acid
  • endothelial cells
  • long non coding rna
  • genome wide
  • dna methylation
  • amino acid
  • case control