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Engineering synthetic phosphorylation signaling networks in human cells.

Xiaoyu YangJason W RocksKaiyi JiangAndrew J WaltersKshitij RaiJing LiuJason NguyenScott D OlsonPankaj MehtaJames J CollinsNichole M DaringerCaleb J Bashor
Published in: bioRxiv : the preprint server for biology (2023)
Protein phosphorylation signaling networks play a central role in how cells sense and respond to their environment. Here, we describe the engineering of artificial phosphorylation networks in which "push-pull" motifs-reversible enzymatic phosphorylation cycles consisting of opposing kinase and phosphatase activities-are assembled from modular protein domain parts and then wired together to create synthetic phosphorylation circuits in human cells. We demonstrate that the composability of our design scheme permits model-guided tuning of circuit function and the ability to make diverse network connections; synthetic phosphorylation circuits can be coupled to upstream cell surface receptors to enable fast-timescale sensing of extracellular ligands, while downstream connections can regulate gene expression. We leverage these capabilities to program cells to act as controllers that dynamically regulate immune cell cytokine production. Our work introduces a generalizable approach for designing and budling phosphorylation signaling circuits that enable user-defined sense-and-respond function for diverse biosensing and therapeutic applications.
Keyphrases
  • protein kinase
  • gene expression
  • induced apoptosis
  • cell surface
  • cell cycle arrest
  • nitric oxide
  • signaling pathway
  • quality improvement
  • binding protein