James J Collins (J J Collins)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 65

Top Topics

Methicillin Resistant Staphylococcus Aureus

Artificial Intelligence

Top Venues

Nature communications

Nature biomedical engineering

Science advances

This page only lists publications with an associated author ORCID identifier.

Publications

Erkin Kuru, Jonathan Rittichier, Helena de Puig, Allison Flores, Subhrajit Rout, Isaac Han, Abigail E Reese, Thomas M Bartlett, Fabio De Moliner, Sylvie G Bernier, Jason D Galpin, Jorge A Marchand, William Bedell, Lindsey Robinson-McCarthy, Christopher A Ahern, Thomas G Bernhardt, David Z Rudner, James J Collins, Marc Vendrell, George M Church
Rapid discovery and evolution of nanosensors containing fluorogenic amino acids. Nature communications 15 (1) (2024)
Fabio Caliendo, Elvira Vitu, Junmin Wang, Shuo-Hsiu Kuo, Hayden Sandt, Casper Nørskov Enghuus, Jesse Tordoff, Neslly Estrada, James J Collins, Ron Weiss
Customizable gene sensing and response without altering endogenous coding sequences. Nature chemical biology (2024)
Felix Wong, Erica J Zheng, Jacqueline A Valeri, Nina M Donghia, Melis N Anahtar, Satotaka Omori, Alicia Li, Andres Cubillos-Ruiz, Aarti Krishnan, Wengong Jin, Abigail L Manson, Jens Friedrichs, Ralf Helbig, Behnoush Hajian, Dawid K Fiejtek, Florence F Wagner, Holly H Soutter, Ashlee M Earl, Jonathan M Stokes, Lars David Renner, James J Collins
Discovery of a structural class of antibiotics with explainable deep learning. Nature 626 (7997) (2023)
Jacqueline A Valeri, Aarti Krishnan, James J Collins
Gaming bacterial metabolism. Nature microbiology 8 (6) (2023)
Raphael V Gayet, Katherine Ilia, Shiva Razavi, Nathaniel D Tippens, Makoto A Lalwani, Kehan Zhang, Jack X Chen, Jonathan C Chen, Jose Vargas-Asencio, James J Collins
Autocatalytic base editing for RNA-responsive translational control. Nature communications 14 (1) (2023)
Felix Wong, Erica J Zheng, Jacqueline A Valeri, Nina M Donghia, Melis N Anahtar, Satotaka Omori, Alicia Li, Andres Cubillos-Ruiz, Aarti Krishnan, Wengong Jin, Abigail L Manson, Jens Friedrichs, Ralf Helbig, Behnoush Hajian, Dawid K Fiejtek, Florence F Wagner, Holly H Soutter, Ashlee M Earl, Jonathan M Stokes, Lars David Renner, James J Collins
Discovery of a structural class of antibiotics with explainable deep learning. Nature (2023)
Raphael V Gayet, Katherine Ilia, Shiva Razavi, Nathaniel D Tippens, Makoto A Lalwani, Kehan Zhang, Jack X Chen, Jonathan C Chen, Jose Vargas-Asencio, James J Collins
Autocatalytic base editing for RNA-responsive translational control. Nature communications 14 (1) (2023)
Felix Wong, Erica J Zheng, Jacqueline A Valeri, Nina M Donghia, Melis N Anahtar, Satotaka Omori, Alicia Li, Andres Cubillos-Ruiz, Aarti Krishnan, Wengong Jin, Abigail L Manson, Jens Friedrichs, Ralf Helbig, Behnoush Hajian, Dawid K Fiejtek, Florence F Wagner, Holly H Soutter, Ashlee M Earl, Jonathan M Stokes, Lars David Renner, James J Collins
Discovery of a structural class of antibiotics with explainable deep learning. Nature 626 (7997) (2023)
Felix Wong, Erica J Zheng, Jacqueline A Valeri, Nina M Donghia, Melis N Anahtar, Satotaka Omori, Alicia Li, Andres Cubillos-Ruiz, Aarti Krishnan, Wengong Jin, Abigail L Manson, Jens Friedrichs, Ralf Helbig, Behnoush Hajian, Dawid K Fiejtek, Florence F Wagner, Holly H Soutter, Ashlee M Earl, Jonathan M Stokes, Lars David Renner, James J Collins
Discovery of a structural class of antibiotics with explainable deep learning. Nature 626 (7997) (2023)
Elizabeth A Phillips, Adam D Silverman, Aric Joneja, Michael Liu, Carl Brown, Paul Carlson, Christine Coticchia, Kristen Shytle, Alex Larsen, Nadish Goyal, Vincent Cai, Jason Huang, Jennifer E Hickey, Emily Ryan, Joycelynn Acheampong, Pradeep Ramesh, James J Collins, William J Blake
Detection of viral RNAs at ambient temperature via reporter proteins produced through the target-splinted ligation of DNA probes. Nature biomedical engineering (2023)
Xiaoyu Yang, Jason W Rocks, Kaiyi Jiang, Andrew J Walters, Kshitij Rai, Jing Liu, Jason Nguyen, Scott D Olson, Pankaj Mehta, James J Collins, Nichole M Daringer, Caleb J Bashor
Engineering synthetic phosphorylation signaling networks in human cells. bioRxiv : the preprint server for biology (2023)
Katherine Ilia, Nika Shakiba, Trevor Bingham, Ross D Jones, Michael M Kaminski, Eliezer Aravera, Simone Bruno, Sebastian Palacios, Ron Weiss, James J Collins, Domitilla Del Vecchio, Thorsten M Schlaeger
Synthetic genetic circuits to uncover the OCT4 trajectories of successful reprogramming of human fibroblasts. Science advances 9 (48) (2023)
Felix Wong, Erica J Zheng, Jacqueline A Valeri, Nina M Donghia, Melis N Anahtar, Satotaka Omori, Alicia Li, Andres Cubillos-Ruiz, Aarti Krishnan, Wengong Jin, Abigail L Manson, Jens Friedrichs, Ralf Helbig, Behnoush Hajian, Dawid K Fiejtek, Florence F Wagner, Holly H Soutter, Ashlee M Earl, Jonathan M Stokes, Lars David Renner, James J Collins
Discovery of a structural class of antibiotics with explainable deep learning. Nature 626 (7997) (2023)
Max A English, Miguel A Alcantar, James J Collins
A self-propagating, barcoded transposon system for the dynamic rewiring of genomic networks. Molecular systems biology (2023)
Felix Wong, Erica J Zheng, Jacqueline A Valeri, Nina M Donghia, Melis N Anahtar, Satotaka Omori, Alicia Li, Andres Cubillos-Ruiz, Aarti Krishnan, Wengong Jin, Abigail L Manson, Jens Friedrichs, Ralf Helbig, Behnoush Hajian, Dawid K Fiejtek, Florence F Wagner, Holly H Soutter, Ashlee M Earl, Jonathan M Stokes, Lars David Renner, James J Collins
Discovery of a structural class of antibiotics with explainable deep learning. Nature 626 (7997) (2023)
Felix Wong, Erica J Zheng, Jacqueline A Valeri, Nina M Donghia, Melis N Anahtar, Satotaka Omori, Alicia Li, Andres Cubillos-Ruiz, Aarti Krishnan, Wengong Jin, Abigail L Manson, Jens Friedrichs, Ralf Helbig, Behnoush Hajian, Dawid K Fiejtek, Florence F Wagner, Holly H Soutter, Ashlee M Earl, Jonathan M Stokes, Lars David Renner, James J Collins
Discovery of a structural class of antibiotics with explainable deep learning. Nature 626 (7997) (2023)
Felix Wong, Erica J Zheng, Jacqueline A Valeri, Nina M Donghia, Melis N Anahtar, Satotaka Omori, Alicia Li, Andres Cubillos-Ruiz, Aarti Krishnan, Wengong Jin, Abigail L Manson, Jens Friedrichs, Ralf Helbig, Behnoush Hajian, Dawid K Fiejtek, Florence F Wagner, Holly H Soutter, Ashlee M Earl, Jonathan M Stokes, Lars David Renner, James J Collins
Discovery of a structural class of antibiotics with explainable deep learning. Nature (2023)
Gary Liu, Denise B Catacutan, Khushi Rathod, Kyle Swanson, Wengong Jin, Jody C Mohammed, Anush Chiappino-Pepe, Saad A Syed, Meghan Fragis, Kenneth Rachwalski, Jakob Magolan, Michael G Surette, Brian K Coombes, Tommi S Jaakkola, Regina Barzilay, James J Collins, Jonathan M Stokes
Deep learning-guided discovery of an antibiotic targeting Acinetobacter baumannii. Nature chemical biology (2023)
Felix Wong, de la Fuente-Nunez Cesar, James J Collins
Leveraging artificial intelligence in the fight against infectious diseases. Science (New York, N.Y.) 381 (6654) (2023)
Felix Wong, Satotaka Omori, Nina M Donghia, Erica J Zheng, James J Collins
Discovering small-molecule senolytics with deep neural networks. Nature aging (2023)
Teng Bao, Yuanchao Qian, Yongping Xin, James J Collins, Ting Lu
Engineering microbial division of labor for plastic upcycling. Nature communications 14 (1) (2023)
Felix Wong, Erica J Zheng, Jacqueline A Valeri, Nina M Donghia, Melis N Anahtar, Satotaka Omori, Alicia Li, Andres Cubillos-Ruiz, Aarti Krishnan, Wengong Jin, Abigail L Manson, Jens Friedrichs, Ralf Helbig, Behnoush Hajian, Dawid K Fiejtek, Florence F Wagner, Holly H Soutter, Ashlee M Earl, Jonathan M Stokes, Lars David Renner, James J Collins
Discovery of a structural class of antibiotics with explainable deep learning. Nature 626 (7997) (2023)
Raphael V Gayet, Katherine Ilia, Shiva Razavi, Nathaniel D Tippens, Makoto A Lalwani, Kehan Zhang, Jack X Chen, Jonathan C Chen, Jose Vargas-Asencio, James J Collins
Autocatalytic base editing for RNA-responsive translational control. Nature communications 14 (1) (2023)
Felix Wong, Erica J Zheng, Jacqueline A Valeri, Nina M Donghia, Melis N Anahtar, Satotaka Omori, Alicia Li, Andres Cubillos-Ruiz, Aarti Krishnan, Wengong Jin, Abigail L Manson, Jens Friedrichs, Ralf Helbig, Behnoush Hajian, Dawid K Fiejtek, Florence F Wagner, Holly H Soutter, Ashlee M Earl, Jonathan M Stokes, Lars David Renner, James J Collins
Discovery of a structural class of antibiotics with explainable deep learning. Nature 626 (7997) (2023)
Felix Wong, Erica J Zheng, Jacqueline A Valeri, Nina M Donghia, Melis N Anahtar, Satotaka Omori, Alicia Li, Andres Cubillos-Ruiz, Aarti Krishnan, Wengong Jin, Abigail L Manson, Jens Friedrichs, Ralf Helbig, Behnoush Hajian, Dawid K Fiejtek, Florence F Wagner, Holly H Soutter, Ashlee M Earl, Jonathan M Stokes, Lars David Renner, James J Collins
Discovery of a structural class of antibiotics with explainable deep learning. Nature (2023)
Felix Wong, Erica J Zheng, Jacqueline A Valeri, Nina M Donghia, Melis N Anahtar, Satotaka Omori, Alicia Li, Andres Cubillos-Ruiz, Aarti Krishnan, Wengong Jin, Abigail L Manson, Jens Friedrichs, Ralf Helbig, Behnoush Hajian, Dawid K Fiejtek, Florence F Wagner, Holly H Soutter, Ashlee M Earl, Jonathan M Stokes, Lars David Renner, James J Collins
Discovery of a structural class of antibiotics with explainable deep learning. Nature 626 (7997) (2023)
Felix Wong, Aarti Krishnan, Erica J Zheng, Hannes Stärk, Abigail L Manson, Ashlee M Earl, Tommi Jaakkola, James J Collins
Benchmarking AlphaFold-enabled molecular docking predictions for antibiotic discovery. Molecular systems biology 18 (9) (2022)
Margot Karlikow, Severino Jefferson Ribeiro da Silva, Yuxiu Guo, Seray Cicek, Larissa Krokovsky, Paige Homme, Yilin Xiong, Talia Xu, Maria-Angelica Calderón-Peláez, Sigrid Camacho-Ortega, Duo Ma, Jurandy Júnior Ferraz de Magalhães, Bárbara Nayane Rosário Fernandes Souza, Diego Guerra de Albuquerque Cabral, Katariina Jaenes, Polina Sutyrina, Tom Ferrante, Andrea Denisse Benitez, Victoria Nipaz, Patricio Ponce, Darius G Rackus, James J Collins, Marcelo Paiva, Jaime E Castellanos, Varsovia Cevallos, Alexander A Green, Constância Ayres, Lindomar Pena, Keith Pardee
Field validation of the performance of paper-based tests for the detection of the Zika and chikungunya viruses in serum samples. Nature biomedical engineering 6 (3) (2022)
Edroaldo Lummertz da Rocha, Caroline Kubaczka, Wade W Sugden, Mohamad Ali Najia, Ran Jing, Arianna Markel, Zachary C LeBlanc, Rafael Dos Santos Peixoto, Marcelo Falchetti, James J Collins, Trista E North, George Q Daley
CellComm infers cellular crosstalk that drives haematopoietic stem and progenitor cell development. Nature cell biology 24 (4) (2022)
Devora A Najjar, Joshua Rainbow, Sanjay S Timilsina, Pawan Jolly, Helena de Puig, Mohamed Yafia, Nolan Durr, Hani M Sallum, Galit Alter, Jonathan Z Li, Xu G Yu, David R Walt, Joseph A Paradiso, Pedro Estrela, James J Collins, Donald E Ingber
A lab-on-a-chip for the concurrent electrochemical detection of SARS-CoV-2 RNA and anti-SARS-CoV-2 antibodies in saliva and plasma. Nature biomedical engineering 6 (8) (2022)
Erica J Zheng, Ian W Andrews, Alexandra T Grote, Abigail L Manson, Miguel A Alcantar, Ashlee M Earl, James J Collins
Modulating the evolutionary trajectory of tolerance using antibiotics with different metabolic dependencies. Nature communications 13 (1) (2022)
Marta Broto, Michael M Kaminski, Christopher Adrianus, Nayoung Kim, Robert Greensmith, Schan Dissanayake-Perera, Alexander J Schubert, Xiao Tan, Hyemin Kim, Anand S Dighe, James J Collins, Molly M Stevens
Nanozyme-catalysed CRISPR assay for preamplification-free detection of non-coding RNAs. Nature nanotechnology 17 (10) (2022)
Andrés Cubillos-Ruiz, Miguel A Alcantar, Nina M Donghia, Pablo Cárdenas, Julian Avila Pacheco, James J Collins
An engineered live biotherapeutic for the prevention of antibiotic-induced dysbiosis. Nature biomedical engineering 6 (7) (2022)
Qing Sun, Nicole M Vega, Bernardo Cervantes, Christopher P Mancuso, Ning Mao, Megan N Taylor, James J Collins, Ahmad S Khalil, Jeff Gore, Timothy K Lu
Enhancing nutritional niche and host defenses by modifying the gut microbiome. Molecular systems biology 18 (11) (2022)
Felix Wong, Jonathan M Stokes, Bernardo Cervantes, Sider Penkov, Jens Friedrichs, Lars David Renner, James J Collins
Cytoplasmic condensation induced by membrane damage is associated with antibiotic lethality. Nature communications 12 (1) (2021)
Andres Cubillos-Ruiz, Tingxi Guo, Anna Sokolovska, Paul F Miller, James J Collins, Timothy K Lu, Jose M Lora
Engineering living therapeutics with synthetic biology. Nature reviews. Drug discovery 20 (12) (2021)
Evan M Zhao, Angelo S Mao, Helena de Puig, Kehan Zhang, Nathaniel D Tippens, Xiao Tan, F Ann Ran, Isaac Han, Peter Q Nguyen, Emma J Chory, Tiffany Y Hua, Pradeep Ramesh, David B Thompson, Crystal Yuri Oh, Eric S Zigon, Max A English, James J Collins
RNA-responsive elements for eukaryotic translational control. Nature biotechnology (2021)
Peter Q Nguyen, Luis R Soeknsen, Nina M Donghia, Nicolaas M Angenent-Mari, Helena de Puig, Ally Huang, Rose Lee, Shimyn Slomovic, Tommaso Galbersanini, Geoffrey Lansberry, Hani M Sallum, Evan M Zhao, James B Niemi, James J Collins
Wearable materials with embedded synthetic biology sensors for biomolecule detection. Nature biotechnology 39 (11) (2021)
Allison J Lopatkin, Sarah C Bening, Abigail L Manson, Jonathan M Stokes, Michael A Kohanski, Ahmed H Badran, Ashlee M Earl, Nicole J Cheney, Jason H Yang, James J Collins
Clinically relevant mutations in core metabolic genes confer antibiotic resistance. Science (New York, N.Y.) 371 (6531) (2021)
Helena de Puig, Rose A Lee, Devora A Najjar, Xiao Tan, Luis R Soeknsen, Nicolaas M Angenent-Mari, Nina M Donghia, Nicole E Weckman, Audrey Ory, Carlos F Ng, Peter Q Nguyen, Angelo S Mao, Thomas C Ferrante, Geoffrey Lansberry, Hani Sallum, James Niemi, James J Collins
Minimally instrumented SHERLOCK (miSHERLOCK) for CRISPR-based point-of-care diagnosis of SARS-CoV-2 and emerging variants. Science advances 7 (32) (2021)
Luis R Soeknsen, Timothy Kassis, Susan T Conover, Berta Marti-Fuster, Judith S Birkenfeld, Jason Tucker-Schwartz, Asif Naseem, Robert R Stavert, Caroline C Kim, Maryanne M Senna, José Antonio Avilés-Izquierdo, James J Collins, Regina Barzilay, Martha L Gray
Using deep learning for dermatologist-level detection of suspicious pigmented skin lesions from wide-field images. Science translational medicine 13 (581) (2021)
Jang Hwan Cho, Atsushi Okuma, Katri Sofjan, Seunghee Lee, James J Collins, Wilson W Wong
Engineering advanced logic and distributed computing in human CAR immune cells. Nature communications 12 (1) (2021)
Wengong Jin, Jonathan M Stokes, Richard T Eastman, Zina Itkin, Alexey V Zakharov, James J Collins, Tommi S Jaakkola, Regina Barzilay
Deep learning identifies synergistic drug combinations for treating COVID-19. Proceedings of the National Academy of Sciences of the United States of America 118 (39) (2021)
Michael M Kaminski, Omar O Abudayyeh, Jonathan Samuel Gootenberg, Feng Zhang, James J Collins
CRISPR-based diagnostics. Nature biomedical engineering 5 (7) (2021)
Chad W Johnston, Ahmed H Badran, James J Collins
Continuous bioactivity-dependent evolution of an antibiotic biosynthetic pathway. Nature communications 11 (1) (2020)
Allison J Lopatkin, James J Collins
Predictive biology: modelling, understanding and harnessing microbial complexity. Nature reviews. Microbiology 18 (9) (2020)
Max A English, Luis R Soeknsen, Raphael V Gayet, Helena de Puig, Nicolaas M Angenent-Mari, Angelo S Mao, Peter Q Nguyen, James J Collins
Programmable CRISPR-responsive smart materials. Science (New York, N.Y.) 365 (6455) (2020)
Rose A Lee, Helena De Puig, Peter Q Nguyen, Nicolaas M Angenent-Mari, Nina M Donghia, James P McGee, Jeffrey D Dvorin, Catherine M Klapperich, Nira R Pollock, James J Collins
Ultrasensitive CRISPR-based diagnostic for field-applicable detection of Plasmodium species in symptomatic and asymptomatic malaria. Proceedings of the National Academy of Sciences of the United States of America 117 (41) (2020)
Q R Xing, Chadi A El Farran, Pradeep Gautam, Y S Chuah, Tushar Warrier, C X D Toh, N Y Kang, Shigeki Sugii, Young Tae Chang, Jian Xu, James J Collins, George Q Daley, Hu Li, Li-Feng Zhang, Yuin-Han Loh
Diversification of reprogramming trajectories revealed by parallel single-cell transcriptome and chromatin accessibility sequencing. Science advances 6 (37) (2020)
Jaeyoung Kirsten Jung, Khalid K Alam, Matthew S Verosloff, Daiana A Capdevila, Morgane Desmau, Phillip R Clauer, Jeong Wook Lee, Peter Q Nguyen, Pablo A Pastén, Sandrine J Matiasek, Jean-François Gaillard, David P Giedroc, James J Collins, Julius B Lucks
Cell-free biosensors for rapid detection of water contaminants. Nature biotechnology 38 (12) (2020)
Nathalie Q Balaban, Sophie Helaine, Kim Lewis, Martin Ackermann, Bree Aldridge, Dan I Andersson, Mark P Brynildsen, Dirk Bumann, Andrew Camilli, James J Collins, Christoph Dehio, Sarah M Fortune, Jean-Marc Ghigo, Wolf-Dietrich Hardt, Alexander Harms, Matthias Heinemann, Deborah T Hung, Urs Jenal, Bruce R Levin, Jan Michiels, Gisela Storz, Man-Wah Tan, Tanel Tenson, Laurence Van Melderen, Annelies Zinkernagel
Definitions and guidelines for research on antibiotic persistence. Nature reviews. Microbiology 17 (7) (2020)
Michael M Kaminski, Miguel A Alcantar, Isadora T Lape, Robert Greensmith, Allison C Huske, Jacqueline A Valeri, Francisco M Marty, Verena Klämbt, Jamil Azzi, Enver Akalin, Leonardo V Riella, James J Collins
A CRISPR-based assay for the detection of opportunistic infections post-transplantation and for the monitoring of transplant rejection. Nature biomedical engineering 4 (6) (2020)
Felix Wong, James J Collins
Evidence that coronavirus superspreading is fat-tailed. Proceedings of the National Academy of Sciences of the United States of America 117 (47) (2020)
Nicolaas M Angenent-Mari, Alexander S Garruss, Luis R Soeknsen, George Church, James J Collins
A deep learning approach to programmable RNA switches. Nature communications 11 (1) (2020)
Raphael V Gayet, Helena de Puig, Max A English, Luis R Soenksen, Peter Q Nguyen, Angelo S Mao, Nicolaas M Angenent-Mari, James J Collins
Creating CRISPR-responsive smart materials for diagnostics and programmable cargo release. Nature protocols 15 (9) (2020)
Melissa A Kinney, Linda T Vo, Jenna M Frame, Jessica Barragan, Ashlee J Conway, Shuai Li, Kwok-Kin Wong, James J Collins, Patrick Cahan, Trista E North, Douglas A Lauffenburger, George Q Daley
A systems biology pipeline identifies regulatory networks for stem cell engineering. Nature biotechnology 37 (7) (2019)
Caleb J Bashor, Nikit Patel, Sandeep Choubey, Ali Beyzavi, Jané Kondev, James J Collins, Ahmad S Khalil
Complex signal processing in synthetic gene circuits using cooperative regulatory assemblies. Science (New York, N.Y.) 364 (6440) (2019)
Jongmin Kim, Yu Zhou, Paul D Carlson, Mario Teichmann, Soma Chaudhary, Friedrich C Simmel, Pamela A Silver, James J Collins, Julius B Lucks, Peng Yin, Alexander A Green
De novo-designed translation-repressing riboregulators for multi-input cellular logic. Nature chemical biology 15 (12) (2019)
Ning Mao, Andres Cubillos-Ruiz, D Ewen Cameron, James J Collins
Probiotic strains detect and suppress cholera in mice. Science translational medicine 10 (445) (2019)
Allison J Lopatkin, Jonathan M Stokes, Erica J Zheng, Jason H Yang, Melissa K Takahashi, Lingchong You, James J Collins
Bacterial metabolic state more accurately predicts antibiotic lethality than growth rate. Nature microbiology 4 (12) (2019)
Jonathan M Stokes, Arnaud Gutierrez, Allison J Lopatkin, Ian W Andrews, Shawn French, Ivan Matic, Eric D Brown, James J Collins
A multiplexable assay for screening antibiotic lethality against drug-tolerant bacteria. Nature methods 16 (4) (2019)
Jessica C Stark, Ally Huang, Peter Q Nguyen, Rachel S Dubner, Karen J Hsu, Thomas C Ferrante, Mary Anderson, Ada Kanapskyte, Quinn Mucha, Jessica S Packett, Palak Patel, Richa Patel, Deema Qaq, Tyler Zondor, Julie Burke, Thomas Martinez, Ashlee Miller-Berry, Aparna Puppala, Kara Reichert, Miriam Schmid, Lance Brand, Lander R Hill, Jemima F Chellaswamy, Nuhie Faheem, Suzanne Fetherling, Elissa Gong, Eddie Marie Gonzalzles, Teresa Granito, Jenna Koritsaris, Binh Nguyen, Sujud Ottman, Christina Palffy, Angela Patel, Sheila Skweres, Adriane Slaton, TaRhonda Woods, Nina M Donghia, Keith Pardee, James J Collins, Michael C Jewett
BioBits™ Bright: A fluorescent synthetic biology education kit. Science advances 4 (8) (2018)
Ally Huang, Peter Q Nguyen, Jessica C Stark, Melissa K Takahashi, Nina M Donghia, Tom Ferrante, Aaron J Dy, Karen J Hsu, Rachel S Dubner, Keith Pardee, Michael C Jewett, James J Collins
BioBits™ Explorer: A modular synthetic biology education kit. Science advances 4 (8) (2018)
Rebecca S Shapiro, Alejandro Chavez, Caroline B M Porter, Meagan Hamblin, Christian S Kaas, James E DiCarlo, Guisheng Zeng, Xiaoli Xu, Alexey V Revtovich, Natalia V Kirienko, Yan-Ming Wang, George M Church, James J Collins
A CRISPR-Cas9-based gene drive platform for genetic interaction analysis in Candida albicans. Nature microbiology 3 (1) (2017)
Jonathan Samuel Gootenberg, Omar O Abudayyeh, Jeong Wook Lee, Patrick Essletzbichler, Aaron J Dy, Julia Joung, Vanessa Verdine, Nina Donghia, Nichole M Daringer, Catherine A Freije, Cameron A Myhrvold, Roby P Bhattacharyya, Jonathan Livny, Aviv Regev, Eugene V Koonin, Deborah T Hung, Pardis C Sabeti, James J Collins, Feng Zhang
Nucleic acid detection with CRISPR-Cas13a/C2c2. Science (New York, N.Y.) 356 (6336) (2017)