Comparison of three congruent patient-specific cell types for the modelling of a human genetic Schwann-cell disorder.
Bipasha Mukherjee-ClavinRuifa MiBarbara KernIn Young ChoiHotae LimYohan OhBenjamin LannonKevin J KimShaughn BellJunho K HurWoochang HwangYoung Hyun CheOmer HabibRobert H BalohKevin C EgganGerald BrandacherAhmet HokeLorenz StuderYong Jun KimGabsang LeePublished in: Nature biomedical engineering (2019)
Patient-specific human-induced pluripotent stem cells (hiPSCs) hold great promise for the modelling of genetic disorders. However, these cells display wide intra- and interindividual variations in gene expression, which makes distinguishing true-positive and false-positive phenotypes challenging. Data from hiPSC phenotypes and human embryonic stem cells (hESCs) harbouring the same disease mutation are also lacking. Here, we report a comparison of the molecular, cellular and functional characteristics of three congruent patient-specific cell types-hiPSCs, hESCs and direct-lineage-converted cells-derived from currently available differentiation and direct-reprogramming technologies for use in the modelling of Charcot-Marie-Tooth 1A, a human genetic Schwann-cell disorder featuring a 1.4 Mb chromosomal duplication. We find that the chemokines C-X-C motif ligand chemokine-1 (CXCL1) and macrophage chemoattractant protein-1 (MCP1) are commonly upregulated in all three congruent models and in clinical patient samples. The development of congruent models of a single genetic disease using somatic cells from a common patient will facilitate the search for convergent phenotypes.
Keyphrases
- induced pluripotent stem cells
- endothelial cells
- single cell
- gene expression
- induced apoptosis
- copy number
- genome wide
- dna methylation
- pluripotent stem cells
- case report
- machine learning
- adipose tissue
- small molecule
- cell death
- big data
- mesenchymal stem cells
- electronic health record
- endoplasmic reticulum stress
- signaling pathway
- peripheral nerve
- data analysis