SWGTS-a platform for stream-based host DNA depletion.

Philipp Spohr Max Ried Laura Kühle Alexander T Dilthey

Published in: Bioinformatics (Oxford, England) (2024)

SWGTS is available on GitHub: https://github.com/AlBi-HHU/swgts (https://doi.org/10.5281/zenodo.10891052). The repository also contains a jupyter notebook that can be used to reproduce all the benchmarks used in this article. All datasets used for benchmarking are publicly available.

Keyphrases

circulating tumor
cell free
single molecule
high throughput
rna seq
circulating tumor cells
single cell