Alexander T Dilthey (Alexander Dilthey)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 25

Top Topics

Quality Control

Single Molecule

Microbial Community

Top Venues

bioRxiv : the preprint server for biology

Scientific reports

Nature communications

Bioinformatics (Oxford, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Philipp Spohr, Sebastian Alexander Scharf, Anna Rommerskirchen, Birgit Henrich, Paul S Jäger, Gunnar W Klau, Rainer Haas, Alexander T Dilthey, Klaus Pfeffer
Insights into gut microbiomes in stem cell transplantation by comprehensive shotgun long-read sequencing. Scientific reports 14 (1) (2024)
Philipp Spohr, Max Ried, Laura Kühle, Alexander T Dilthey
SWGTS-a platform for stream-based host DNA depletion. Bioinformatics (Oxford, England) 40 (6) (2024)
Martin Hunt, Angie S Hinrichs, Daniel Paolo Anderson, Lily Karim, Bethany L Dearlove, Jeff Knaggs, Bede Constantinides, Philip W Fowler, Gillian Rodger, Teresa Street, Sheila F Lumley, Hermione Webster, Theo Sanderson, Christopher Ruis, Nicola de Maio, Lucas N Amenga-Etego, Dominic Selorm Yao Amuzu, Martin Avaro, Gordon Akanzuwine Awandare, Reuben Ayivor-Djanie, Matthew Bashton, Elizabeth M Batty, Yaw Bediako, Denise De Belder, Estefania Benedetti, Andreas Bergthaler, Stefan A Boers, Josefina Campos, Rosina Afua Ampomah Carr, Facundo Cuba, Maria Elena Dattero, Wanwisa Dejnirattisai, Alexander T Dilthey, Kwabena Obeng Duedu, Lukas Endler, Ilka Engelmann, Ngiambudulu M Francisco, Jonas Fuchs, Etienne Gnimpieba Z, Soraya Groc, Jones Gyamfi, Dennis Heemskerk, Torsten Houwaart, Nei-Yuan Hsiao, Matthew Huska, Martin Hölzer, Arash Iranzadeh, Hanna Jarva, Chandima Jeewandara, Bani Jolly, Rageema Joseph, Ravi Kant, Karrie Ko Kwan Ki, Satu Kurkela, Maija Lappalainen, Marie Lataretu, Chang Liu, Gathsaurie Neelika Malavige, Tapfumanei Mashe, Juthathip Mongkolsapaya, Brigitte Montes, José Arturo Molina-Mora, Collins Misita Morang'a, Bernard Mvula, Niranjan Nagarajan, Andrew Nelson, Joyce M Ngoi, Joana Paula da Paixão, Marcus Panning, Tomás Javier Poklepovich, Peter Kojo Quashie, Diyanath Ranasinghe, Mara Russo, James Emmanuel San, Nicholas D Sanderson, Vinod Scaria, Gavin Screaton, Tarja A Sironen, Abay Sisay, Darren L Smith, Teemu Smura, Piyada Supasa, Chayaporn Suphavilai, Jeremy Swann, Houriiyah Tegally, Bryan Tegomoh, Olli Vapalahti, Andreas Walker, Robert John Wilkinson, Carolyn Williamson, null null, Tulio de Oliveira, Timothy Ea Peto, Derrick Crook, Russell Corbett-Detig, Zamin Iqbal
Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny. bioRxiv : the preprint server for biology (2024)
Philipp Spohr, Max Ried, Laura Kühle, Alexander T Dilthey
SWGTS-a platform for stream-based host DNA depletion. Bioinformatics (Oxford, England) 40 (6) (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read sequenced metagenomes with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Philipp Spohr, Sebastian Alexander Scharf, Anna Rommerskirchen, Birgit Henrich, Paul S Jäger, Gunnar W Klau, Rainer Haas, Alexander T Dilthey, Klaus Pfeffer
Insights into gut microbiomes in stem cell transplantation by comprehensive shotgun long-read sequencing. Scientific reports 14 (1) (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Philipp Spohr, Max Ried, Laura Kühle, Alexander T Dilthey
SWGTS-a platform for stream-based host DNA depletion. Bioinformatics (Oxford, England) 40 (6) (2024)
Philipp Spohr, Sebastian Alexander Scharf, Anna Rommerskirchen, Birgit Henrich, Paul S Jäger, Gunnar W Klau, Rainer Haas, Alexander T Dilthey, Klaus Pfeffer
Insights into gut microbiomes in stem cell transplantation by comprehensive shotgun long-read sequencing. Scientific reports 14 (1) (2024)
Martin Hunt, Angie S Hinrichs, Daniel Paolo Anderson, Lily Karim, Bethany L Dearlove, Jeff Knaggs, Bede Constantinides, Philip W Fowler, Gillian Rodger, Teresa Street, Sheila F Lumley, Hermione Webster, Theo Sanderson, Christopher Ruis, Nicola de Maio, Lucas N Amenga-Etego, Dominic Selorm Yao Amuzu, Martin Avaro, Gordon Akanzuwine Awandare, Reuben Ayivor-Djanie, Matthew Bashton, Elizabeth M Batty, Yaw Bediako, Denise De Belder, Estefania Benedetti, Andreas Bergthaler, Stefan A Boers, Josefina Campos, Rosina Afua Ampomah Carr, Facundo Cuba, Maria Elena Dattero, Wanwisa Dejnirattisai, Alexander T Dilthey, Kwabena Obeng Duedu, Lukas Endler, Ilka Engelmann, Ngiambudulu M Francisco, Jonas Fuchs, Etienne Gnimpieba Z, Soraya Groc, Jones Gyamfi, Dennis Heemskerk, Torsten Houwaart, Nei-Yuan Hsiao, Matthew Huska, Martin Hölzer, Arash Iranzadeh, Hanna Jarva, Chandima Jeewandara, Bani Jolly, Rageema Joseph, Ravi Kant, Karrie Ko Kwan Ki, Satu Kurkela, Maija Lappalainen, Marie Lataretu, Chang Liu, Gathsaurie Neelika Malavige, Tapfumanei Mashe, Juthathip Mongkolsapaya, Brigitte Montes, José Arturo Molina-Mora, Collins Misita Morang'a, Bernard Mvula, Niranjan Nagarajan, Andrew Nelson, Joyce M Ngoi, Joana Paula da Paixão, Marcus Panning, Tomás Javier Poklepovich, Peter Kojo Quashie, Diyanath Ranasinghe, Mara Russo, James Emmanuel San, Nicholas D Sanderson, Vinod Scaria, Gavin Screaton, Tarja A Sironen, Abay Sisay, Darren L Smith, Teemu Smura, Piyada Supasa, Chayaporn Suphavilai, Jeremy Swann, Houriiyah Tegally, Bryan Tegomoh, Olli Vapalahti, Andreas Walker, Robert John Wilkinson, Carolyn Williamson, null null, Tulio de Oliveira, Timothy Ea Peto, Derrick Crook, Russell Corbett-Detig, Zamin Iqbal
Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny. bioRxiv : the preprint server for biology (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read sequenced metagenomes with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read sequenced metagenomes with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Nicolae Sapoval, Yunxi Liu, Kristen D Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G Nute, Alona Tyshaieva, Alexander T Dilthey, Erin K Molloy, Todd J Treangen
Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet. bioRxiv : the preprint server for biology (2024)
Kristen D Curry, Qi Wang, Michael G Nute, Alona Tyshaieva, Elizabeth Reeves, Sirena Soriano, Qinglong Wu, Enid Graeber, Patrick Finzer, Werner Mendling, Tor C Savidge, Sonia Villapol, Alexander T Dilthey, Todd J Treangen
Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data. Nature methods 19 (7) (2022)
Till Baar, Sebastian Dümcke, Saskia Gressel, Björn Schwalb, Alexander T Dilthey, Patrick Cramer, Achim Tresch
RNA transcription and degradation of Alu retrotransposons depends on sequence features and evolutionary history. G3 (Bethesda, Md.) 12 (5) (2022)
Neneh Sallah, Wendell Miley, Nazzarena Labo, Tommy Carstensen, Segun Fatumo, Deepti Gurdasani, Martin O Pollard, Alexander T Dilthey, Alexander J Mentzer, Vickie Marshall, Elena Maria Cornejo Castro, Cristina Pomilla, Elizabeth H Young, Gershim Asiki, Martin Lloyd Hibberd, Manjinder S Sandhu, Paul Kellam, Robert Newton, Denise Whitby, Inês A Barroso
Distinct genetic architectures and environmental factors associate with host response to the γ2-herpesvirus infections. Nature communications 11 (1) (2020)
Chen-Shan Chin, Justin Wagner, Qiandong Zeng, Erik Garrison, Shilpa Garg, Arkarachai Fungtammasan, Mikko Rautiainen, Sergey Aganezov, Melanie Kirsche, Samantha Zarate, Michael C Schatz, Chunlin Xiao, William J Rowell, Charles Markello, Jesse Farek, Fritz J Sedlazeck, Vikas Bansal, Byunggil Yoo, Neil A Miller, Xin Zhou, Andrew Carroll, Alvaro Martinez Barrio, Marc Salit, Tobias Marschall, Alexander T Dilthey, Justin M Zook
A diploid assembly-based benchmark for variants in the major histocompatibility complex. Nature communications 11 (1) (2020)
Alexander T Dilthey, Chirag Jain, Sergey Koren, Adam M Phillippy
Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps. Nature communications 10 (1) (2019)
Miten Jain, Sergey Koren, Karen H Miga, Josh Quick, Arthur C Rand, Thomas A Sasani, John R Tyson, Andrew D Beggs, Alexander T Dilthey, Ian T Fiddes, Sunir Malla, Hannah Marriott, Tom Nieto, Justin O'Grady, Hugh E Olsen, Brent S Pedersen, Arang Rhie, Hollian Richardson, Aaron R Quinlan, Terrance P Snutch, Louise Tee, Benedict Paten, Adam M Phillippy, Jared T Simpson, Nicholas J Loman, Matthew William Loose
Nanopore sequencing and assembly of a human genome with ultra-long reads. Nature biotechnology 36 (4) (2018)
Evan Biederstedt, Jeffrey C Oliver, Nancy F Hansen, Aarti Jajoo, Nathan A Dunn, Andrew Olson, Ben Busby, Alexander T Dilthey
NovoGraph: Genome graph construction from multiple long-read de novo assemblies. F1000Research 7 (2018)
Evan Biederstedt, Jeffrey C Oliver, Nancy F Hansen, Aarti Jajoo, Nathan A Dunn, Andrew Olson, Ben Busby, Alexander T Dilthey
NovoGraph: Genome graph construction from multiple long-read de novo assemblies. F1000Research (2018)
Sergey Koren, Arang Rhie, Brian P Walenz, Alexander T Dilthey, Derek M Bickhart, Sarah B Kingan, Stefan Hiendleder, John Lewis Williams, Timothy P L Smith, Adam M Phillippy
De novo assembly of haplotype-resolved genomes with trio binning. Nature biotechnology (2018)
Adrian Cortes, Calliope A Dendrou, Allan Motyer, Luke Jostins, Damjan Vukcevic, Alexander T Dilthey, Peter Donnelly, Stephen Leslie, Lars Fugger, Gilean McVean
Bayesian analysis of genetic association across tree-structured routine healthcare data in the UK Biobank. Nature genetics 49 (9) (2017)