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A versatile nuclei extraction protocol for single nucleus sequencing in non-model species-Optimization in various Atlantic salmon tissues.

Rose Ruiz DanielsRichard S TaylorRoss DobieSarah SalisburyJames J FurnissEmily ClarkDaniel J MacqueenDiego Robledo
Published in: PloS one (2023)
The use of single cell sequencing technologies has exploded over recent years, and is now commonly used in many non-model species. Sequencing nuclei instead of whole cells has become increasingly popular, as it does not require the processing of samples immediately after collection. Here we present a highly effective nucleus isolation protocol that outperforms previously available method in challenging samples in a non-model specie. This protocol can be successfully applied to extract nuclei from a variety of tissues and species.
Keyphrases
  • single cell
  • randomized controlled trial
  • rna seq
  • gene expression
  • high throughput
  • oxidative stress
  • genetic diversity
  • cell cycle arrest
  • cell death